Variant report

Variant	rs17232052
Chromosome Location	chr10:97978518-97978519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97970030..97972006-chr10:97977646..97979456,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12266223	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17111457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111459	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748003	1.00[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17232052	PRRX1	trans	lymphoblastoid	seeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:97949600-97989200	Strong transcription	Liver	Liver
3	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
4	chr10:97957600-97988400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:97959000-97988800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:97961000-97985600	Weak transcription	Aorta	Aorta
7	chr10:97964000-97985800	Weak transcription	Stomach Mucosa	stomach
8	chr10:97965800-97998600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:97967400-97981000	Weak transcription	Colonic Mucosa	Colon
10	chr10:97967600-97990600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:97971200-97986400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:97972200-97987600	Strong transcription	Duodenum Mucosa	Duodenum
13	chr10:97972400-97989600	Strong transcription	Primary B cells from cord blood	blood
14	chr10:97972600-97982400	Weak transcription	Thymus	Thymus
15	chr10:97972600-97989200	Strong transcription	GM12878-XiMat	blood
16	chr10:97973400-97989200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr10:97974600-97980600	Weak transcription	Esophagus	oesophagus
18	chr10:97974800-97981400	Weak transcription	Gastric	stomach
19	chr10:97975000-97981000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:97975000-97981000	Weak transcription	Pancreas	Pancrea
21	chr10:97975000-97982800	Weak transcription	Fetal Stomach	stomach
22	chr10:97975000-97989600	Weak transcription	Lung	lung
23	chr10:97976400-97978800	Weak transcription	Fetal Intestine Large	intestine
24	chr10:97976400-97981400	Weak transcription	Spleen	Spleen
25	chr10:97976800-97982800	Weak transcription	Placenta	Placenta
26	chr10:97977000-97978800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:97977000-97980000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:97978000-97983600	Weak transcription	Adipose Nuclei	Adipose
29	chr10:97978200-97979400	Strong transcription	Fetal Intestine Small	intestine

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