Variant report

Variant	rs1724390
Chromosome Location	chr17:43663247-43663248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:43659845..43663705-chr17:62914069..62917954,5	K562	blood:
2	chr17:43660094..43663642-chr17:44267773..44272304,6	K562	blood:
3	chr17:43660175..43663705-chr17:62914069..62915711,3	K562	blood:
4	chr17:43661600..43664224-chr17:62914176..62915865,6	MCF-7	breast:
5	chr17:43660518..43663332-chr17:44270073..44271774,2	MCF-7	breast:
6	chr17:43660094..43663642-chr17:44269227..44273306,6	K562	blood:
7	chr17:43661202..43663303-chr17:44342809..44346012,4	K562	blood:

Variant related genes	Relation type
ENSG00000261575	Chromatin interaction
ENSG00000214401	Chromatin interaction
ENSG00000120071	Chromatin interaction
ENSG00000176809	Chromatin interaction

Extended variants
information (count: 326 )
Associated
traits (count: 124 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs16940633	0.91[AFR][1000 genomes]
rs1706748	0.91[AFR][1000 genomes]
rs17686610	0.91[AFR][1000 genomes]
rs17687462	0.91[AFR][1000 genomes]
rs17687504	0.91[AFR][1000 genomes]
rs17687534	0.91[AFR][1000 genomes]
rs17687571	0.91[AFR][1000 genomes]
rs17687625	0.91[AFR][1000 genomes]
rs17687667	0.91[AFR][1000 genomes]
rs17687740	0.91[AFR][1000 genomes]
rs17687838	0.91[AFR][1000 genomes]
rs17687849	0.91[AFR][1000 genomes]
rs17688032	0.91[AFR][1000 genomes]
rs17688056	0.91[AFR][1000 genomes]
rs17688068	0.91[AFR][1000 genomes]
rs17688090	0.91[AFR][1000 genomes]
rs17688126	0.91[AFR][1000 genomes]
rs17688205	0.91[AFR][1000 genomes]
rs17688249	0.91[AFR][1000 genomes]
rs17688296	0.91[AFR][1000 genomes]
rs17688767	0.91[AFR][1000 genomes]
rs17688773	0.91[AFR][1000 genomes]
rs17688875	0.91[AFR][1000 genomes]
rs17688922	0.91[AFR][1000 genomes]
rs17688944	0.91[AFR][1000 genomes]
rs17689104	0.91[AFR][1000 genomes]
rs17689116	0.91[AFR][1000 genomes]
rs17689182	0.91[AFR][1000 genomes]
rs17689218	0.91[AFR][1000 genomes]
rs17760577	0.91[AFR][1000 genomes]
rs17760631	0.82[AFR][1000 genomes]
rs17760733	0.91[AFR][1000 genomes]
rs17760817	0.91[AFR][1000 genomes]
rs17761046	0.91[AFR][1000 genomes]
rs17761100	0.91[AFR][1000 genomes]
rs17761124	0.91[AFR][1000 genomes]
rs17761207	0.91[AFR][1000 genomes]
rs17761581	0.91[AFR][1000 genomes]
rs17762073	0.91[AFR][1000 genomes]
rs17762165	0.91[AFR][1000 genomes]
rs17762308	0.91[AFR][1000 genomes]
rs17762361	0.91[AFR][1000 genomes]
rs17762535	0.91[AFR][1000 genomes]
rs241020	0.82[AFR][1000 genomes]
rs241021	0.91[AFR][1000 genomes]
rs241028	0.91[AFR][1000 genomes]
rs241032	0.91[AFR][1000 genomes]
rs241033	0.91[AFR][1000 genomes]
rs241041	0.91[AFR][1000 genomes]
rs2458179	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2458187	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2462835	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2463523	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2668644	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2942164	0.91[AFR][1000 genomes]
rs2942165	0.91[AFR][1000 genomes]
rs2942167	0.91[AFR][1000 genomes]
rs2942168	0.91[AFR][1000 genomes]
rs2942169	0.91[AFR][1000 genomes]
rs2942170	0.91[AFR][1000 genomes]
rs3108317	0.91[AFR][1000 genomes]
rs3418	0.91[AFR][1000 genomes]
rs383241	0.91[AFR][1000 genomes]
rs385691	0.91[AFR][1000 genomes]
rs389217	0.91[AFR][1000 genomes]
rs389978	0.91[AFR][1000 genomes]
rs392116	0.91[AFR][1000 genomes]
rs393675	0.91[AFR][1000 genomes]
rs396593	0.91[AFR][1000 genomes]
rs413778	0.91[AFR][1000 genomes]
rs413917	0.91[AFR][1000 genomes]
rs422112	0.91[AFR][1000 genomes]
rs424243	0.91[AFR][1000 genomes]
rs434428	0.91[AFR][1000 genomes]
rs434598	0.91[AFR][1000 genomes]
rs434971	0.91[AFR][1000 genomes]
rs448830	0.91[AFR][1000 genomes]
rs55651627	0.91[AFR][1000 genomes]
rs55669046	0.91[AFR][1000 genomes]
rs55972157	0.91[AFR][1000 genomes]
rs55974014	0.91[AFR][1000 genomes]
rs55980621	0.91[AFR][1000 genomes]
rs56100013	0.91[AFR][1000 genomes]
rs56110538	0.91[AFR][1000 genomes]
rs56167560	0.81[AFR][1000 genomes]
rs56290582	0.91[AFR][1000 genomes]
rs56323832	0.91[AFR][1000 genomes]
rs56397077	0.91[AFR][1000 genomes]
rs56400821	0.91[AFR][1000 genomes]
rs62053939	0.91[AFR][1000 genomes]
rs62053940	0.91[AFR][1000 genomes]
rs62053943	0.81[AFR][1000 genomes]
rs62053945	0.82[AFR][1000 genomes]
rs62053946	0.91[AFR][1000 genomes]
rs62053947	0.91[AFR][1000 genomes]
rs62053948	0.91[AFR][1000 genomes]
rs62053949	0.91[AFR][1000 genomes]
rs62053950	0.91[AFR][1000 genomes]
rs62053951	0.91[AFR][1000 genomes]
rs62053952	0.91[AFR][1000 genomes]
rs62053953	0.91[AFR][1000 genomes]
rs62053954	0.91[AFR][1000 genomes]
rs62053955	0.91[AFR][1000 genomes]
rs62053956	0.91[AFR][1000 genomes]
rs62053957	0.91[AFR][1000 genomes]
rs62053958	0.81[AFR][1000 genomes]
rs62053959	0.81[AFR][1000 genomes]
rs62055661	0.91[AFR][1000 genomes]
rs62055662	0.91[AFR][1000 genomes]
rs62055663	0.91[AFR][1000 genomes]
rs62055664	0.91[AFR][1000 genomes]
rs62055665	0.91[AFR][1000 genomes]
rs62055689	0.91[AFR][1000 genomes]
rs62055690	0.91[AFR][1000 genomes]
rs62055691	0.91[AFR][1000 genomes]
rs62055692	0.91[AFR][1000 genomes]
rs62055693	0.91[AFR][1000 genomes]
rs62055696	0.91[AFR][1000 genomes]
rs62055697	0.91[AFR][1000 genomes]
rs62055698	0.91[AFR][1000 genomes]
rs62055700	0.91[AFR][1000 genomes]
rs62055701	0.91[AFR][1000 genomes]
rs62055702	0.91[AFR][1000 genomes]
rs62055704	0.91[AFR][1000 genomes]
rs62055705	0.91[AFR][1000 genomes]
rs62055706	0.91[AFR][1000 genomes]
rs62055707	0.91[AFR][1000 genomes]
rs62055708	0.91[AFR][1000 genomes]
rs62055710	0.91[AFR][1000 genomes]
rs62055712	0.91[AFR][1000 genomes]
rs62055713	0.91[AFR][1000 genomes]
rs62055714	0.91[AFR][1000 genomes]
rs62055715	0.91[AFR][1000 genomes]
rs62055716	0.91[AFR][1000 genomes]
rs62055717	0.91[AFR][1000 genomes]
rs62055751	0.91[AFR][1000 genomes]
rs62055752	0.91[AFR][1000 genomes]
rs62055753	0.91[AFR][1000 genomes]
rs62055754	0.91[AFR][1000 genomes]
rs62056874	0.91[AFR][1000 genomes]
rs62056875	0.91[AFR][1000 genomes]
rs62056876	0.91[AFR][1000 genomes]
rs62056877	0.91[AFR][1000 genomes]
rs62056878	0.91[AFR][1000 genomes]
rs62056879	0.91[AFR][1000 genomes]
rs62056880	0.91[AFR][1000 genomes]
rs62056881	0.91[AFR][1000 genomes]
rs62056905	0.91[AFR][1000 genomes]
rs62056906	0.91[AFR][1000 genomes]
rs62056908	0.91[AFR][1000 genomes]
rs62056910	0.91[AFR][1000 genomes]
rs62056911	0.91[AFR][1000 genomes]
rs62056912	0.91[AFR][1000 genomes]
rs62056913	0.91[AFR][1000 genomes]
rs62056915	0.91[AFR][1000 genomes]
rs62056916	0.91[AFR][1000 genomes]
rs62056917	0.91[AFR][1000 genomes]
rs62056918	0.91[AFR][1000 genomes]
rs62056919	0.91[AFR][1000 genomes]
rs62056920	0.91[AFR][1000 genomes]
rs62056921	0.91[AFR][1000 genomes]
rs62056922	0.91[AFR][1000 genomes]
rs62056925	0.91[AFR][1000 genomes]
rs62056926	0.91[AFR][1000 genomes]
rs62056927	0.91[AFR][1000 genomes]
rs62056928	0.91[AFR][1000 genomes]
rs62056929	0.91[AFR][1000 genomes]
rs62056930	0.91[AFR][1000 genomes]
rs62056931	0.91[AFR][1000 genomes]
rs62056932	0.91[AFR][1000 genomes]
rs62056933	0.91[AFR][1000 genomes]
rs62056934	0.91[AFR][1000 genomes]
rs62064364	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62066128	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:152 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431632	chr17:43199763-43733983	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	210 gene(s)	inside rSNPs	diseases
2	nsv431633	chr17:43199763-43772540	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	210 gene(s)	inside rSNPs	diseases
3	esv2754858	chr17:43403005-43666906	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv431637	chr17:43403005-43716885	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2757659	chr17:43457886-43733983	Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv2758691	chr17:43457886-43816023	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	esv2755280	chr17:43459697-43666906	Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv1065930	chr17:43467291-44151468	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	nsv431638	chr17:43470156-43693538	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	esv34307	chr17:43470760-43666906	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	esv2755466	chr17:43470760-43666906	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
12	esv2756448	chr17:43470760-43666906	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
13	nsv431640	chr17:43470760-43666906	Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv2753768	chr17:43470760-43734304	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
15	esv2754725	chr17:43470760-43741452	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv35084	chr17:43485791-43666906	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
17	esv2754833	chr17:43485791-43666906	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
18	nsv431643	chr17:43485791-43666906	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
19	nsv431642	chr17:43485791-43716885	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
20	nsv431645	chr17:43516402-43666906	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
21	esv2753034	chr17:43516402-43693538	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
22	nsv870307	chr17:43518341-43675408	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
23	esv35055	chr17:43541656-43666906	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
24	esv2755879	chr17:43541656-43741452	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
25	esv2752514	chr17:43541834-43666906	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
26	nsv431649	chr17:43541834-43666906	Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
27	nsv431647	chr17:43541834-43693538	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
28	esv33076	chr17:43570399-43675437	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
29	nsv9563	chr17:43572112-43706914	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
30	esv18131	chr17:43573474-43711700	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
31	nsv1056136	chr17:43574122-43693538	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
32	esv2760446	chr17:43574134-43675472	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
33	nsv1059393	chr17:43585744-43711024	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
34	esv1833170	chr17:43587171-43679202	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
35	nsv869210	chr17:43593476-44224221	Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
36	nsv2064	chr17:43618013-43663452	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	esv2758456	chr17:43621949-43816023	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
38	nsv427998	chr17:43621949-43962285	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
39	esv1803623	chr17:43633924-43702683	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	esv1794804	chr17:43639741-43704496	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
41	nsv833458	chr17:43645186-43785161	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
42	esv1808071	chr17:43648399-43663461	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
43	esv1797118	chr17:43648399-43707300	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
44	esv1794464	chr17:43648716-43706747	Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
45	esv3413132	chr17:43649669-43663367	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
46	esv1805515	chr17:43650116-43665677	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
47	esv1791978	chr17:43650467-43702483	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
48	esv1797195	chr17:43650841-43663461	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	esv1803202	chr17:43650841-43691377	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
50	nsv820458	chr17:43650872-43664215	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:124)

SNP	Gene	Cis/trans	Tissue	Source
rs1724390	LRRC37A	cis	Nerve Tibial	GTEx
rs1724390	LRRC37A4P	cis	Heart Left Ventricle	GTEx
rs1724390	LRRC37A4P	cis	Nerve Tibial	GTEx
rs1724390	RP11-707O23.5	cis	Artery Tibial	GTEx
rs1724390	LRRC37A	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	RP11-259G18.3	cis	Stomach	GTEx
rs1724390	LRRC37A2	cis	lung	GTEx
rs1724390	LRRC37A4P	cis	Esophagus Muscularis	GTEx
rs1724390	MAPK8IP1	trans	lymphoblastoid	RTeQTL
rs1724390	LRRC37A	cis	Whole Blood	GTEx
rs1724390	RP11-259G18.2	cis	Stomach	GTEx
rs1724390	LRRC37A4P	cis	Esophagus Mucosa	GTEx
rs1724390	RP11-259G18.3	cis	Nerve Tibial	GTEx
rs1724390	LRRC37A4P	cis	Artery Tibial	GTEx
rs1724390	DND1P1	cis	Whole Blood	GTEx
rs1724390	CRHR1-IT1	cis	Thyroid	GTEx
rs1724390	CRHR1	cis	Nerve Tibial	GTEx
rs1724390	RP11-259G18.3	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	RP11-707O23.5	cis	Thyroid	GTEx
rs1724390	KANSL1-AS1	cis	Thyroid	GTEx
rs1724390	RP11-259G18.3	cis	Esophagus Muscularis	GTEx
rs1724390	CRHR1-IT1	cis	Adipose Subcutaneous	GTEx
rs1724390	LRRC37A2	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	RP11-259G18.2	cis	Artery Aorta	GTEx
rs1724390	ARHGAP27	Cis_1M	lymphoblastoid	RTeQTL
rs1724390	LRRC37A4P	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	RP11-259G18.2	cis	Thyroid	GTEx
rs1724390	RP11-707O23.5	cis	Heart Left Ventricle	GTEx
rs1724390	LRRC37A	cis	Artery Aorta	GTEx
rs1724390	MAPT	cis	Esophagus Mucosa	GTEx
rs1724390	CRHR1-IT1	cis	lung	GTEx
rs1724390	CRHR1-IT1	cis	Artery Aorta	GTEx
rs1724390	LRRC37A	cis	Stomach	GTEx
rs1724390	RP11-259G18.3	cis	Artery Aorta	GTEx
rs1724390	KANSL1-AS1	cis	Nerve Tibial	GTEx
rs1724390	LRRC37A2	cis	Nerve Tibial	GTEx
rs1724390	KANSL1-AS1	cis	Esophagus Muscularis	GTEx
rs1724390	DND1P1	cis	Artery Tibial	GTEx
rs1724390	LRRC37A2	cis	Artery Aorta	GTEx
rs1724390	CRHR1-IT1	cis	Heart Left Ventricle	GTEx
rs1724390	RP11-259G18.2	cis	lung	GTEx
rs1724390	CRHR1-IT1	cis	Artery Tibial	GTEx
rs1724390	RP11-259G18.3	cis	Thyroid	GTEx
rs1724390	LRRC37A	cis	Adipose Subcutaneous	GTEx
rs1724390	KANSL1-AS1	cis	Whole Blood	GTEx
rs1724390	LRRC37A	cis	Muscle Skeletal	GTEx
rs1724390	LRRC37A4P	cis	Artery Aorta	GTEx
rs1724390	LRRC37A2	cis	Esophagus Muscularis	GTEx
rs1724390	RP11-707O23.5	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	RP11-259G18.3	cis	Muscle Skeletal	GTEx
rs1724390	DND1P1	cis	Nerve Tibial	GTEx
rs1724390	LRRC37A	cis	Thyroid	GTEx
rs1724390	LRRC37A2	cis	Muscle Skeletal	GTEx
rs1724390	KANSL1-AS1	cis	Stomach	GTEx
rs1724390	RP11-707O23.5	cis	Whole Blood	GTEx
rs1724390	LRRC37A	cis	Artery Tibial	GTEx
rs1724390	RP11-259G18.2	cis	Heart Left Ventricle	GTEx
rs1724390	DND1P1	cis	Adipose Subcutaneous	GTEx
rs1724390	CRHR1	cis	Artery Tibial	GTEx
rs1724390	KANSL1-AS1	cis	Artery Tibial	GTEx
rs1724390	LRRC37A	cis	Esophagus Mucosa	GTEx
rs1724390	LRRC37A4P	cis	lung	GTEx
rs1724390	CRHR1	cis	lung	GTEx
rs1724390	RP11-259G18.3	cis	Whole Blood	GTEx
rs1724390	KANSL1-AS1	cis	Adipose Subcutaneous	GTEx
rs1724390	LRRC37A4P	cis	Stomach	GTEx
rs1724390	KANSL1-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	LRRC37A2	cis	Artery Tibial	GTEx
rs1724390	KANSL1-AS1	cis	Esophagus Mucosa	GTEx
rs1724390	CRHR1	cis	Muscle Skeletal	GTEx
rs1724390	RP11-259G18.3	cis	lung	GTEx
rs1724390	RP11-259G18.2	cis	Esophagus Muscularis	GTEx
rs1724390	RP11-259G18.3	cis	Adipose Subcutaneous	GTEx
rs1724390	LOC644246	Cis_1M	lymphoblastoid	RTeQTL
rs1724390	CRHR1	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	RP11-259G18.2	cis	Adipose Subcutaneous	GTEx
rs1724390	LRRC37A2	cis	Thyroid	GTEx
rs1724390	CRHR1	cis	Esophagus Muscularis	GTEx
rs1724390	RP11-707O23.5	cis	lung	GTEx
rs1724390	RP11-259G18.3	cis	Artery Tibial	GTEx
rs1724390	RP11-259G18.3	cis	Heart Left Ventricle	GTEx
rs1724390	LRRC37A2	cis	Whole Blood	GTEx
rs1724390	RP11-259G18.2	cis	Muscle Skeletal	GTEx
rs1724390	RP11-259G18.3	cis	Esophagus Mucosa	GTEx
rs1724390	RP11-259G18.2	cis	Artery Tibial	GTEx
rs1724390	CRHR1-IT1	cis	Esophagus Mucosa	GTEx
rs1724390	KANSL1-AS1	cis	Artery Aorta	GTEx
rs1724390	CRHR1-IT1	cis	Muscle Skeletal	GTEx
rs1724390	LRRC37A4P	cis	Muscle Skeletal	GTEx
rs1724390	CRHR1-IT1	cis	Esophagus Muscularis	GTEx
rs1724390	DND1P1	cis	lung	GTEx
rs1724390	DND1P1	cis	Esophagus Mucosa	GTEx
rs1724390	LRRC37A4P	cis	Thyroid	GTEx
rs1724390	LRRC37A4P	cis	Whole Blood	GTEx
rs1724390	CRHR1-IT1	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	LRRC37A	cis	Esophagus Muscularis	GTEx
rs1724390	LRRC37A2	cis	Adipose Subcutaneous	GTEx
rs1724390	DND1P1	cis	Thyroid	GTEx
rs1724390	RP11-707O23.5	cis	Adipose Subcutaneous	GTEx
rs1724390	LRRC37A2	cis	Stomach	GTEx
rs1724390	KANSL1-AS1	cis	Muscle Skeletal	GTEx
rs1724390	CRHR1	cis	Adipose Subcutaneous	GTEx
rs1724390	LRRC37A4	cis	multi-tissue	Pritchard
rs1724390	RP11-259G18.2	cis	Whole Blood	GTEx
rs1724390	LRRC37A	cis	lung	GTEx
rs1724390	RP11-259G18.2	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	LRRC37A2	cis	Esophagus Mucosa	GTEx
rs1724390	CRHR1	cis	Artery Aorta	GTEx
rs1724390	RP11-707O23.5	cis	Nerve Tibial	GTEx
rs1724390	CRHR1-IT1	cis	Whole Blood	GTEx
rs1724390	KANSL1-AS1	cis	lung	GTEx
rs1724390	DND1P1	cis	Artery Aorta	GTEx
rs1724390	LRRC37A2	cis	Heart Left Ventricle	GTEx
rs1724390	KANSL1-AS1	cis	Heart Left Ventricle	GTEx
rs1724390	LRRC37A4P	cis	Adipose Subcutaneous	GTEx
rs1724390	DND1P1	cis	Skin Sun Exposed Lower leg	GTEx
rs1724390	LRRC37A4	Cis_1M	lymphoblastoid	RTeQTL
rs1724390	RP11-259G18.2	cis	Esophagus Mucosa	GTEx
rs1724390	CRHR1-IT1	cis	Nerve Tibial	GTEx
rs1724390	RP11-259G18.2	cis	Nerve Tibial	GTEx
rs1724390	ARL17	Cis_1M	lymphoblastoid	RTeQTL
rs1724390	MAPT-AS1	cis	Muscle Skeletal	GTEx
rs1724390	CRHR1-IT1	cis	Stomach	GTEx
rs1724390	DND1P1	cis	Muscle Skeletal	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:43660400-43663400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr17:43660400-43664000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr17:43660400-43664200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr17:43660600-43663800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:43660600-43663800	Active TSS	Right Atrium	heart
6	chr17:43660600-43664000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr17:43660600-43664000	Active TSS	GM12878-XiMat	blood
8	chr17:43660600-43664400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr17:43660800-43663400	Active TSS	H9 Cell Line	embryonic stem cell
10	chr17:43660800-43663400	Active TSS	Fetal Intestine Large	intestine
11	chr17:43660800-43663600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:43660800-43663800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr17:43660800-43663800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr17:43660800-43663800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:43660800-43663800	Active TSS	Fetal Brain Female	brain
16	chr17:43660800-43664000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:43660800-43664000	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr17:43660800-43664400	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr17:43661000-43663400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:43661000-43664000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr17:43661000-43664000	Active TSS	Esophagus	oesophagus
22	chr17:43661200-43663400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr17:43661200-43663400	Active TSS	Fetal Kidney	kidney
24	chr17:43661200-43663400	Active TSS	Fetal Thymus	thymus
25	chr17:43661200-43663400	Active TSS	Small Intestine	intestine
26	chr17:43661200-43663800	Active TSS	Lung	lung
27	chr17:43661200-43663800	Active TSS	Pancreas	Pancrea
28	chr17:43661200-43663800	Active TSS	Right Ventricle	heart
29	chr17:43661200-43663800	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr17:43661400-43663400	Active TSS	Primary T cells fromperipheralblood	blood
31	chr17:43661400-43663400	Active TSS	Fetal Lung	lung
32	chr17:43661400-43663400	Active TSS	Fetal Muscle Leg	muscle
33	chr17:43661400-43663600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
34	chr17:43661400-43663800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr17:43661400-43663800	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr17:43661400-43663800	Active TSS	Ovary	ovary
37	chr17:43661400-43663800	Active TSS	Thymus	Thymus
38	chr17:43661400-43663800	Active TSS	A549	lung
39	chr17:43661400-43663800	Active TSS	HSMM	muscle
40	chr17:43661400-43663800	Active TSS	NHLF	lung
41	chr17:43661400-43664000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr17:43661400-43664000	Active TSS	NHDF-Ad	bronchial
43	chr17:43661600-43663400	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr17:43661600-43663400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr17:43661600-43663400	Active TSS	Brain Angular Gyrus	brain
46	chr17:43661600-43663400	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr17:43661600-43663400	Active TSS	Brain Substantia Nigra	brain
48	chr17:43661600-43663400	Active TSS	Colon Smooth Muscle	Colon
49	chr17:43661600-43663400	Active TSS	Fetal Intestine Small	intestine
50	chr17:43661600-43663800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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