Variant report

Variant	rs17245810
Chromosome Location	chr11:120972161-120972162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10892676	1.00[CHB][hapmap]
rs11218148	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11218158	1.00[CHB][hapmap]
rs11218160	1.00[CHB][hapmap]
rs11826847	1.00[CHB][hapmap]
rs12275038	1.00[CHB][hapmap]
rs12279811	1.00[CHB][hapmap]
rs1941299	1.00[CHB][hapmap]
rs4427574	1.00[CHB][hapmap]
rs4539330	1.00[CHB][hapmap]
rs4623911	1.00[CHB][hapmap]
rs4641485	1.00[CHB][hapmap]
rs4935760	1.00[CHB][hapmap]
rs4936576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4936578	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4936579	1.00[CHB][hapmap]
rs4936583	1.00[CHB][hapmap]
rs4936584	1.00[CHB][hapmap]
rs4936585	1.00[CHB][hapmap]
rs4936586	1.00[CHB][hapmap]
rs4936587	1.00[CHB][hapmap]
rs513182	1.00[CHB][hapmap]
rs528958	1.00[CHB][hapmap]
rs541623	1.00[CHB][hapmap]
rs581786	1.00[CHB][hapmap]
rs606674	1.00[CHB][hapmap]
rs607014	1.00[CHB][hapmap]
rs615697	1.00[CHB][hapmap]
rs616184	1.00[CHB][hapmap]
rs61901232	1.00[ASN][1000 genomes]
rs620164	1.00[CHB][hapmap]
rs620778	1.00[CHB][hapmap]
rs624428	1.00[CHB][hapmap]
rs665743	1.00[CHB][hapmap]
rs688106	1.00[CHB][hapmap]
rs7105356	1.00[CHB][hapmap]
rs7108587	1.00[CHB][hapmap]
rs7108594	1.00[CHB][hapmap]
rs7108741	1.00[CHB][hapmap]
rs7108971	1.00[CHB][hapmap]
rs7114879	1.00[CHB][hapmap]
rs7114915	1.00[CHB][hapmap]
rs7120647	1.00[CHB][hapmap]
rs7122110	1.00[CHB][hapmap]
rs7125224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7128792	1.00[CHB][hapmap]
rs7130952	1.00[CHB][hapmap]
rs877538	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120942800-120979000	Weak transcription	Aorta	Aorta
2	chr11:120958200-120975200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120958800-120980600	Weak transcription	Brain Germinal Matrix	brain
4	chr11:120959600-120975800	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:120962600-120976000	Weak transcription	HSMMtube	muscle
6	chr11:120970400-120972800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:120970600-120973400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:120971000-120973400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:120971200-120972200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:120971200-120973200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:120971400-120973000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:120971400-120974600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:120971400-120975000	Weak transcription	Ovary	ovary
14	chr11:120971400-120975200	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:120971600-120972200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:120971600-120975000	Weak transcription	Fetal Lung	lung
17	chr11:120971800-120974600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:120971800-120975000	Weak transcription	Fetal Stomach	stomach
19	chr11:120971800-120983600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:120972000-120972400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:120972000-120973000	Enhancers	H1 Cell Line	embryonic stem cell

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