Variant report

Variant	rs7108971
Chromosome Location	chr11:121106570-121106571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr11:121106480-121106596	GM12878	blood:	n/a	n/a
2	NFIC	chr11:121106546-121109225	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121096484..121098779-chr11:121104853..121107666,2	K562	blood:

Variant related genes	Relation type
ENSG00000254515	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10892676	1.00[CHB][hapmap]
rs10892692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218148	1.00[CHB][hapmap]
rs11218158	1.00[CHB][hapmap]
rs11218160	1.00[CHB][hapmap]
rs11826847	1.00[CHB][hapmap]
rs12275038	1.00[CHB][hapmap]
rs12279811	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288505	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245810	1.00[CHB][hapmap]
rs1939934	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941299	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943656	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427574	1.00[CHB][hapmap]
rs4539330	1.00[CHB][hapmap]
rs4623911	1.00[CHB][hapmap]
rs4641485	1.00[CHB][hapmap]
rs4935760	1.00[CHB][hapmap]
rs4936576	1.00[CHB][hapmap]
rs4936578	1.00[CHB][hapmap]
rs4936579	1.00[CHB][hapmap]
rs4936583	1.00[CHB][hapmap]
rs4936584	1.00[CHB][hapmap]
rs4936585	1.00[CHB][hapmap]
rs4936586	1.00[CHB][hapmap]
rs4936587	1.00[CHB][hapmap]
rs509058	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513182	1.00[CHB][hapmap]
rs524392	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528958	1.00[CHB][hapmap]
rs541623	1.00[CHB][hapmap]
rs581786	1.00[CHB][hapmap]
rs606674	1.00[CHB][hapmap]
rs607014	1.00[CHB][hapmap]
rs614634	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615697	1.00[CHB][hapmap]
rs616184	1.00[CHB][hapmap]
rs620164	1.00[CHB][hapmap]
rs620778	1.00[CHB][hapmap]
rs624428	1.00[CHB][hapmap]
rs639891	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589862	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665743	1.00[CHB][hapmap]
rs688106	1.00[CHB][hapmap]
rs7105356	1.00[CHB][hapmap]
rs7108587	1.00[CHB][hapmap]
rs7108594	1.00[CHB][hapmap]
rs7108741	1.00[CHB][hapmap]
rs7110565	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114879	1.00[CHB][hapmap]
rs7114915	1.00[CHB][hapmap]
rs7120647	1.00[CHB][hapmap]
rs7122110	1.00[CHB][hapmap]
rs7125224	1.00[CHB][hapmap]
rs7128792	1.00[CHB][hapmap]
rs7130952	1.00[CHB][hapmap]
rs877538	1.00[CHB][hapmap]
rs9943635	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv975986	chr11:121106081-121115293	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121100600-121107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:121102000-121107000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:121102800-121107400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:121102800-121107400	Weak transcription	Right Atrium	heart
5	chr11:121103000-121106800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:121103000-121107400	Weak transcription	Gastric	stomach
7	chr11:121103000-121107600	Weak transcription	Pancreas	Pancrea
8	chr11:121104400-121107000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:121104400-121108600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:121104400-121109000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:121104400-121110600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:121104600-121106800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:121104600-121108800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:121104600-121109400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:121104600-121110000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:121104600-121110200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:121104600-121113200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:121104800-121107000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:121104800-121108000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:121104800-121109200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:121104800-121113200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:121105000-121106800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:121105200-121107000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:121105400-121108400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:121105600-121107800	Enhancers	Fetal Heart	heart
26	chr11:121105600-121112800	Enhancers	Fetal Muscle Leg	muscle
27	chr11:121105800-121106600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:121105800-121107600	Enhancers	HSMM	muscle
29	chr11:121105800-121109000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:121105800-121113800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr11:121106000-121107000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:121106000-121107800	Enhancers	Liver	Liver
33	chr11:121106000-121110200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:121106200-121106600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:121106200-121107800	Flanking Active TSS	GM12878-XiMat	blood
36	chr11:121106400-121106600	Flanking Active TSS	HSMMtube	muscle
37	chr11:121106400-121107200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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