Variant report

Variant	rs10892692
Chromosome Location	chr11:121103704-121103705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10892676	1.00[CHB][hapmap]
rs11218148	1.00[CHB][hapmap]
rs11218158	1.00[CHB][hapmap]
rs11218160	1.00[CHB][hapmap]
rs11826847	1.00[CHB][hapmap]
rs12275038	1.00[CHB][hapmap]
rs12279811	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288505	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245810	1.00[CHB][hapmap]
rs1939934	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941299	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943656	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427574	1.00[CHB][hapmap]
rs4539330	1.00[CHB][hapmap]
rs4623911	1.00[CHB][hapmap]
rs4641485	1.00[CHB][hapmap]
rs4935760	1.00[CHB][hapmap]
rs4936576	1.00[CHB][hapmap]
rs4936578	1.00[CHB][hapmap]
rs4936579	1.00[CHB][hapmap]
rs4936583	1.00[CHB][hapmap]
rs4936584	1.00[CHB][hapmap]
rs4936585	1.00[CHB][hapmap]
rs4936586	1.00[CHB][hapmap]
rs4936587	1.00[CHB][hapmap]
rs509058	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513182	1.00[CHB][hapmap]
rs524392	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528958	1.00[CHB][hapmap]
rs541623	1.00[CHB][hapmap]
rs581786	1.00[CHB][hapmap]
rs606674	1.00[CHB][hapmap]
rs607014	1.00[CHB][hapmap]
rs614634	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615697	1.00[CHB][hapmap]
rs616184	1.00[CHB][hapmap]
rs620164	1.00[CHB][hapmap]
rs620778	1.00[CHB][hapmap]
rs624428	1.00[CHB][hapmap]
rs639891	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589862	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665743	1.00[CHB][hapmap]
rs688106	1.00[CHB][hapmap]
rs7105356	1.00[CHB][hapmap]
rs7108587	1.00[CHB][hapmap]
rs7108594	1.00[CHB][hapmap]
rs7108741	1.00[CHB][hapmap]
rs7108971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110565	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114879	1.00[CHB][hapmap]
rs7114915	1.00[CHB][hapmap]
rs7120647	1.00[CHB][hapmap]
rs7122110	1.00[CHB][hapmap]
rs7125224	1.00[CHB][hapmap]
rs7128792	1.00[CHB][hapmap]
rs7130952	1.00[CHB][hapmap]
rs877538	1.00[CHB][hapmap]
rs9943635	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10892692	OAF	cis	parietal	SCAN
rs10892692	VPS11	cis	cerebellum	SCAN
rs10892692	HINFP	cis	cerebellum	SCAN
rs10892692	TAGLN	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121099600-121103800	Enhancers	Liver	Liver
2	chr11:121100600-121107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:121101200-121104400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:121101200-121104600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:121102000-121107000	Weak transcription	Fetal Intestine Small	intestine
6	chr11:121102600-121104400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:121102600-121104800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:121102600-121105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:121102800-121107400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:121102800-121107400	Weak transcription	Right Atrium	heart
11	chr11:121103000-121106800	Weak transcription	Fetal Intestine Large	intestine
12	chr11:121103000-121107400	Weak transcription	Gastric	stomach
13	chr11:121103000-121107600	Weak transcription	Pancreas	Pancrea
14	chr11:121103200-121105600	Weak transcription	Fetal Heart	heart

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