Variant report

Variant	rs524392
Chromosome Location	chr11:121066195-121066196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10892676	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10892692	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218148	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11218158	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11218160	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11826847	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs12275038	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs12279811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280641	0.85[EUR][1000 genomes]
rs12285467	0.91[EUR][1000 genomes]
rs12285468	0.91[EUR][1000 genomes]
rs12288505	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245810	1.00[CHB][hapmap]
rs1939934	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1943656	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002948	0.91[EUR][1000 genomes]
rs34217740	0.89[EUR][1000 genomes]
rs4427574	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs4499012	0.95[EUR][1000 genomes]
rs4539330	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4623911	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4641485	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs489985	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4935760	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs4935762	0.85[EUR][1000 genomes]
rs4936576	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4936578	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4936579	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs4936582	0.91[EUR][1000 genomes]
rs4936583	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4936584	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4936585	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4936586	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4936587	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4936590	0.93[EUR][1000 genomes]
rs4936591	0.95[EUR][1000 genomes]
rs509058	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513182	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs528958	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs541623	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs580683	0.93[EUR][1000 genomes]
rs581786	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs606674	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs607014	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs607999	0.91[EUR][1000 genomes]
rs614634	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs616184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs620164	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs620778	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs624428	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs639891	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589862	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665743	0.93[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs688106	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105356	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7108587	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7108594	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs7108741	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs7108971	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110565	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114879	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7114915	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7120647	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7122110	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs7125224	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7128792	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs7130952	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs877538	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs9736671	0.93[EUR][1000 genomes]
rs9943635	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121058800-121069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:121062600-121070000	Weak transcription	Fetal Heart	heart
3	chr11:121064600-121069000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:121065400-121066400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:121065400-121066400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:121065600-121066200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr11:121065600-121066200	Enhancers	Fetal Kidney	kidney
8	chr11:121065800-121066200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:121065800-121066200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:121065800-121070200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:121066000-121066200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:121066000-121066200	Enhancers	HSMMtube	muscle
13	chr11:121066000-121066200	Enhancers	HUVEC	blood vessel
14	chr11:121066000-121067600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:121066000-121068800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:121066000-121068800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:121066000-121068800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:121066000-121069200	Weak transcription	H1 Cell Line	embryonic stem cell

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