Variant report

Variant	rs509058
Chromosome Location	chr11:121077211-121077212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121073176..121075427-chr11:121076496..121078905,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10892676	1.00[CHB][hapmap]
rs10892692	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218148	1.00[CHB][hapmap]
rs11218158	1.00[CHB][hapmap]
rs11218160	1.00[CHB][hapmap]
rs11826847	1.00[CHB][hapmap]
rs12275038	1.00[CHB][hapmap]
rs12279811	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288505	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245810	1.00[CHB][hapmap]
rs1939934	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941299	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943656	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427574	1.00[CHB][hapmap]
rs4499012	0.82[EUR][1000 genomes]
rs4539330	1.00[CHB][hapmap]
rs4623911	1.00[CHB][hapmap]
rs4641485	1.00[CHB][hapmap]
rs489985	0.81[EUR][1000 genomes]
rs4935760	1.00[CHB][hapmap]
rs4936576	1.00[CHB][hapmap]
rs4936578	1.00[CHB][hapmap]
rs4936579	1.00[CHB][hapmap]
rs4936583	1.00[CHB][hapmap]
rs4936584	1.00[CHB][hapmap]
rs4936585	1.00[CHB][hapmap]
rs4936586	1.00[CHB][hapmap]
rs4936587	1.00[CHB][hapmap]
rs4936590	0.81[EUR][1000 genomes]
rs4936591	0.82[EUR][1000 genomes]
rs513182	1.00[CHB][hapmap]
rs524392	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528958	1.00[CHB][hapmap]
rs541623	1.00[CHB][hapmap]
rs580683	0.81[EUR][1000 genomes]
rs581786	1.00[CHB][hapmap]
rs606674	1.00[CHB][hapmap]
rs607014	1.00[CHB][hapmap]
rs614634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615697	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs616184	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs620164	1.00[CHB][hapmap]
rs620778	1.00[CHB][hapmap]
rs624428	1.00[CHB][hapmap]
rs639891	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589862	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665743	1.00[CHB][hapmap]
rs688106	1.00[CHB][hapmap]
rs7105356	1.00[CHB][hapmap]
rs7108587	1.00[CHB][hapmap]
rs7108594	1.00[CHB][hapmap]
rs7108741	1.00[CHB][hapmap]
rs7108971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110565	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114879	1.00[CHB][hapmap]
rs7114915	1.00[CHB][hapmap]
rs7120647	1.00[CHB][hapmap]
rs7122110	1.00[CHB][hapmap]
rs7125224	1.00[CHB][hapmap]
rs7128792	1.00[CHB][hapmap]
rs7130952	1.00[CHB][hapmap]
rs877538	1.00[CHB][hapmap]
rs9736671	0.81[EUR][1000 genomes]
rs9943635	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	esv2761715	chr11:121073605-121083183	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121076800-121077800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:121077000-121077600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:121077000-121077600	Enhancers	Fetal Kidney	kidney
4	chr11:121077000-121077800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:121077000-121078600	Enhancers	HSMMtube	muscle

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