Variant report

Variant	rs616184
Chromosome Location	chr11:121037670-121037671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10892676	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218148	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11218158	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218160	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826847	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275038	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12280641	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12285467	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285468	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288505	0.92[EUR][1000 genomes]
rs17245810	1.00[CHB][hapmap]
rs1939934	0.87[EUR][1000 genomes]
rs1941299	1.00[CHB][hapmap]
rs1943656	0.93[EUR][1000 genomes]
rs34002948	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34217740	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427574	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4499012	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539330	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623911	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641485	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489985	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935760	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935762	0.88[EUR][1000 genomes]
rs4936576	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4936578	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4936579	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936582	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936583	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936584	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936585	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936586	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936587	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936590	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936591	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936592	1.00[ASN][1000 genomes]
rs509058	0.81[EUR][1000 genomes]
rs513182	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524392	0.93[EUR][1000 genomes]
rs528958	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541623	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580683	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581786	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606674	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607014	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607999	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs614634	0.81[EUR][1000 genomes]
rs615697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620164	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620778	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624428	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663435	0.89[ASW][hapmap];0.85[LWK][hapmap];0.91[YRI][hapmap]
rs665743	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688106	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105356	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108587	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108594	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108741	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108971	1.00[CHB][hapmap]
rs7110565	0.94[EUR][1000 genomes]
rs7114879	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114915	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120647	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122110	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125224	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7128792	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130952	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877538	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651697	0.84[EUR][1000 genomes]
rs9736671	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943635	0.93[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs616184	HINFP	cis	cerebellum	SCAN
rs616184	CD3G	cis	cerebellum	SCAN
rs616184	VPS11	cis	cerebellum	SCAN
rs616184	TAGLN	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
5	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
6	chr11:121011400-121040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:121017000-121042400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:121020600-121038800	Weak transcription	Ovary	ovary
9	chr11:121024400-121038800	Weak transcription	Left Ventricle	heart
10	chr11:121024400-121041200	Weak transcription	Fetal Brain Female	brain
11	chr11:121025400-121041200	Weak transcription	Psoas Muscle	Psoas
12	chr11:121025600-121041600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:121028800-121039600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:121029200-121040800	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:121033000-121040000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:121035600-121037800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:121035600-121041600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:121037000-121039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:121037400-121038800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:121037400-121038800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:121037400-121039000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:121037400-121039400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:121037600-121038600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links