Variant report

Variant	rs12288505
Chromosome Location	chr11:121069225-121069226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10892676	0.90[EUR][1000 genomes]
rs10892692	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218148	0.83[EUR][1000 genomes]
rs11218158	0.90[EUR][1000 genomes]
rs11218160	0.89[EUR][1000 genomes]
rs11826847	0.91[EUR][1000 genomes]
rs12275038	0.90[EUR][1000 genomes]
rs12279811	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280641	0.83[EUR][1000 genomes]
rs12285467	0.89[EUR][1000 genomes]
rs12285468	0.89[EUR][1000 genomes]
rs1939934	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941299	1.00[ASN][1000 genomes]
rs1943656	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002948	0.89[EUR][1000 genomes]
rs34217740	0.88[EUR][1000 genomes]
rs4427574	0.88[EUR][1000 genomes]
rs4499012	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4539330	0.83[EUR][1000 genomes]
rs4623911	0.90[EUR][1000 genomes]
rs4641485	0.90[EUR][1000 genomes]
rs489985	0.92[EUR][1000 genomes]
rs4935760	0.88[EUR][1000 genomes]
rs4935762	0.83[EUR][1000 genomes]
rs4936576	0.83[EUR][1000 genomes]
rs4936578	0.83[EUR][1000 genomes]
rs4936579	0.88[EUR][1000 genomes]
rs4936582	0.90[EUR][1000 genomes]
rs4936583	0.90[EUR][1000 genomes]
rs4936584	0.90[EUR][1000 genomes]
rs4936585	0.90[EUR][1000 genomes]
rs4936586	0.90[EUR][1000 genomes]
rs4936587	0.90[EUR][1000 genomes]
rs4936590	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4936591	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs509058	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513182	0.88[EUR][1000 genomes]
rs524392	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528958	0.89[EUR][1000 genomes]
rs541623	0.89[EUR][1000 genomes]
rs580683	0.92[EUR][1000 genomes]
rs581786	0.90[EUR][1000 genomes]
rs606674	0.89[EUR][1000 genomes]
rs607014	0.89[EUR][1000 genomes]
rs607999	0.89[EUR][1000 genomes]
rs614634	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615697	0.92[EUR][1000 genomes]
rs616184	0.92[EUR][1000 genomes]
rs620164	0.89[EUR][1000 genomes]
rs620778	0.89[EUR][1000 genomes]
rs624428	0.89[EUR][1000 genomes]
rs639891	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589862	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665743	0.90[EUR][1000 genomes]
rs688106	0.90[EUR][1000 genomes]
rs7105356	0.90[EUR][1000 genomes]
rs7108587	0.90[EUR][1000 genomes]
rs7108594	0.90[EUR][1000 genomes]
rs7108741	0.88[EUR][1000 genomes]
rs7108971	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110565	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114879	0.89[EUR][1000 genomes]
rs7114915	0.90[EUR][1000 genomes]
rs7120647	0.90[EUR][1000 genomes]
rs7122110	0.91[EUR][1000 genomes]
rs7125224	0.83[EUR][1000 genomes]
rs7128792	0.88[EUR][1000 genomes]
rs7130952	0.91[EUR][1000 genomes]
rs877538	0.90[EUR][1000 genomes]
rs9736671	0.92[EUR][1000 genomes]
rs9943635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975384	chr11:121067538-121074700	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121062600-121070000	Weak transcription	Fetal Heart	heart
2	chr11:121065800-121070200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:121068600-121069400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:121068600-121069400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:121068800-121069600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:121068800-121070800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:121068800-121070800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:121068800-121070800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:121069000-121069400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:121069000-121070800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:121069200-121069600	Bivalent Enhancer	Dnd41	blood
12	chr11:121069200-121070000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr11:121069200-121070800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:121069200-121070800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:121069200-121071000	Enhancers	H1 Cell Line	embryonic stem cell

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