Variant report

Variant	rs17247544
Chromosome Location	chr4:91740716-91740717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10856879	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11722100	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes]
rs11726340	0.83[AMR][1000 genomes]
rs11730172	0.83[AMR][1000 genomes]
rs11730314	0.83[AMR][1000 genomes]
rs11731445	0.82[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes]
rs11946210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12503213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503263	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs13138129	0.86[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs1377916	0.80[CHB][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes]
rs1514742	0.80[CHB][hapmap]
rs1606752	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs17184632	0.92[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs17185779	0.82[AMR][1000 genomes]
rs17186550	0.81[AMR][1000 genomes]
rs17245295	0.82[CEU][hapmap];0.80[CHB][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs17245443	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs17245485	0.83[AMR][1000 genomes]
rs2168075	0.83[AMR][1000 genomes]
rs2870264	0.83[AMR][1000 genomes]
rs4423844	0.83[AMR][1000 genomes]
rs4597790	0.83[AMR][1000 genomes]
rs55705817	0.82[AMR][1000 genomes]
rs62313023	0.83[AMR][1000 genomes]
rs62313024	0.83[AMR][1000 genomes]
rs6532239	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs6532241	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes]
rs6532242	0.83[AMR][1000 genomes]
rs6532243	0.81[AMR][1000 genomes]
rs6811504	0.83[AMR][1000 genomes]
rs6835028	0.85[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs7658990	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7661466	0.83[AMR][1000 genomes]
rs7664025	0.86[CHB][hapmap]
rs7665447	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs7670480	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7683460	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs7688114	0.92[CEU][hapmap]
rs897088	0.81[AMR][1000 genomes]
rs976483	0.82[CEU][hapmap];0.85[CHB][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91735400-91745800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91735600-91754200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:91736400-91753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:91738600-91744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:91738600-91744200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:91738600-91745200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:91738600-91745200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:91740000-91744600	Weak transcription	Pancreas	Pancrea

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