Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10856879	0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs11722100	0.95[CHB][hapmap]
rs11731445	0.86[CHB][hapmap]
rs11946210	0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap]
rs12503213	0.86[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12503263	0.86[CHB][hapmap]
rs1377916	0.86[CHB][hapmap]
rs1514742	0.95[CHB][hapmap]
rs1606752	0.86[CHB][hapmap]
rs17184632	0.90[CHB][hapmap]
rs17245295	0.86[CHB][hapmap]
rs17245443	0.86[ASW][hapmap];0.90[CHB][hapmap]
rs17247544	0.86[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs6532239	0.95[CHB][hapmap]
rs6532241	0.90[CHB][hapmap]
rs6835028	0.90[CHB][hapmap]
rs7658990	0.90[CHB][hapmap]
rs7664025	0.85[ASW][hapmap];1.00[CHB][hapmap];0.82[LWK][hapmap];0.81[AMR][1000 genomes]
rs7665447	0.90[CHB][hapmap]
rs7670480	0.86[CHB][hapmap]
rs7683460	0.88[CHB][hapmap]
rs897086	0.83[AMR][1000 genomes]
rs976483	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879552	chr4:91691313-91729462	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879554	chr4:91692287-91731886	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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