Variant report

Variant	rs11946210
Chromosome Location	chr4:91728407-91728408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10856879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs11722100	0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs11726340	0.82[AMR][1000 genomes]
rs11730172	0.83[AMR][1000 genomes]
rs11730314	0.82[AMR][1000 genomes]
rs11731445	0.82[AMR][1000 genomes]
rs12503213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503263	0.95[CHB][hapmap]
rs13138129	0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap]
rs1377916	0.80[CHB][hapmap];0.81[AMR][1000 genomes]
rs1514742	0.80[CHB][hapmap]
rs1606752	0.95[CHB][hapmap]
rs17184632	0.85[CEU][hapmap];0.80[CHB][hapmap];0.80[AMR][1000 genomes]
rs17185779	0.81[AMR][1000 genomes]
rs17245295	0.82[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes]
rs17245443	0.82[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs17245485	0.82[AMR][1000 genomes]
rs17247544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2168075	0.82[AMR][1000 genomes]
rs2870264	0.82[AMR][1000 genomes]
rs4423844	0.82[AMR][1000 genomes]
rs4597790	0.82[AMR][1000 genomes]
rs55705817	0.81[AMR][1000 genomes]
rs62313023	0.82[AMR][1000 genomes]
rs62313024	0.82[AMR][1000 genomes]
rs6532239	0.92[CEU][hapmap];0.90[CHB][hapmap];0.80[AMR][1000 genomes]
rs6532241	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs6532242	0.82[AMR][1000 genomes]
rs6811504	0.83[AMR][1000 genomes]
rs6835028	0.81[CHB][hapmap];0.80[AMR][1000 genomes]
rs7658990	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs7661466	0.82[AMR][1000 genomes]
rs7664025	0.86[CHB][hapmap]
rs7665447	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs7670480	0.95[CHB][hapmap]
rs7688114	0.86[CEU][hapmap]
rs976483	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879552	chr4:91691313-91729462	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879554	chr4:91692287-91731886	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links