Variant report
| Variant | rs17249248 |
|---|---|
| Chromosome Location | chr8:34792235-34792236 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10503969 | 1.00[ASN][1000 genomes] |
| rs10503970 | 1.00[ASN][1000 genomes] |
| rs10808338 | 1.00[ASN][1000 genomes] |
| rs10954974 | 1.00[ASN][1000 genomes] |
| rs11774088 | 1.00[ASN][1000 genomes] |
| rs11779612 | 1.00[ASN][1000 genomes] |
| rs11782611 | 1.00[ASN][1000 genomes] |
| rs11785346 | 1.00[ASN][1000 genomes] |
| rs1376517 | 1.00[ASN][1000 genomes] |
| rs17249529 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17250409 | 1.00[ASN][1000 genomes] |
| rs2218870 | 1.00[ASN][1000 genomes] |
| rs2923630 | 1.00[ASN][1000 genomes] |
| rs2923631 | 1.00[ASN][1000 genomes] |
| rs2923632 | 1.00[ASN][1000 genomes] |
| rs2923636 | 1.00[ASN][1000 genomes] |
| rs2923637 | 1.00[ASN][1000 genomes] |
| rs2923638 | 1.00[ASN][1000 genomes] |
| rs2923639 | 1.00[ASN][1000 genomes] |
| rs2923640 | 1.00[ASN][1000 genomes] |
| rs2923641 | 1.00[ASN][1000 genomes] |
| rs2923663 | 1.00[ASN][1000 genomes] |
| rs2981315 | 1.00[ASN][1000 genomes] |
| rs2981330 | 1.00[ASN][1000 genomes] |
| rs2981331 | 1.00[ASN][1000 genomes] |
| rs2981332 | 1.00[ASN][1000 genomes] |
| rs2981342 | 1.00[ASN][1000 genomes] |
| rs2981356 | 1.00[ASN][1000 genomes] |
| rs4269538 | 1.00[ASN][1000 genomes] |
| rs4351412 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4527864 | 1.00[ASN][1000 genomes] |
| rs4535735 | 1.00[ASN][1000 genomes] |
| rs7011522 | 1.00[ASN][1000 genomes] |
| rs7460698 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890716 | chr8:34707436-34822797 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017085 | chr8:34742896-35594241 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv539546 | chr8:34742896-35594241 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:34792200-34792400 | Enhancers | Placenta Amnion | Placenta Amnion |
