Variant report

Variant	rs17250409
Chromosome Location	chr8:34857454-34857455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10503969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808338	1.00[ASN][1000 genomes]
rs10954974	1.00[ASN][1000 genomes]
rs11774088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376517	1.00[ASN][1000 genomes]
rs17249248	1.00[ASN][1000 genomes]
rs17249529	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012407	1.00[ASN][1000 genomes]
rs2218870	1.00[ASN][1000 genomes]
rs2405530	1.00[ASN][1000 genomes]
rs2923630	1.00[ASN][1000 genomes]
rs2923631	1.00[ASN][1000 genomes]
rs2923632	1.00[ASN][1000 genomes]
rs2923636	1.00[ASN][1000 genomes]
rs2923637	1.00[ASN][1000 genomes]
rs2923638	1.00[ASN][1000 genomes]
rs2923639	1.00[ASN][1000 genomes]
rs2923640	1.00[ASN][1000 genomes]
rs2923641	1.00[ASN][1000 genomes]
rs2923663	1.00[ASN][1000 genomes]
rs2981315	1.00[ASN][1000 genomes]
rs2981330	1.00[ASN][1000 genomes]
rs2981331	1.00[ASN][1000 genomes]
rs2981332	1.00[ASN][1000 genomes]
rs2981342	1.00[ASN][1000 genomes]
rs2981356	1.00[ASN][1000 genomes]
rs4269538	1.00[ASN][1000 genomes]
rs4351412	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527864	1.00[ASN][1000 genomes]
rs4535735	1.00[ASN][1000 genomes]
rs62505637	1.00[ASN][1000 genomes]
rs62505639	1.00[ASN][1000 genomes]
rs62505640	1.00[ASN][1000 genomes]
rs6468305	1.00[ASN][1000 genomes]
rs6986169	1.00[ASN][1000 genomes]
rs7011522	1.00[ASN][1000 genomes]
rs7460698	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2764070	chr8:34832017-34857556	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv428515	chr8:34849097-34862729	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34853000-34864600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:34857000-34863800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:34857200-34858000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:34857200-34858800	Enhancers	Brain Germinal Matrix	brain
5	chr8:34857400-34857800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:34857400-34857800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links