Variant report

Variant	rs2923663
Chromosome Location	chr8:34938473-34938474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UNC5D-1	chr8:34938424-34938488	XLOC_006771
2	lnc-UNC5D-1	chr8:34938387-34938488	XLOC_006771
3	lnc-UNC5D-1	chr8:34938386-34938488	NONHSAT126000

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10503969	1.00[ASN][1000 genomes]
rs10503970	1.00[ASN][1000 genomes]
rs10808338	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954974	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774088	1.00[ASN][1000 genomes]
rs11779612	1.00[ASN][1000 genomes]
rs11782611	1.00[ASN][1000 genomes]
rs11785346	1.00[ASN][1000 genomes]
rs1376517	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17249248	1.00[ASN][1000 genomes]
rs17249529	1.00[ASN][1000 genomes]
rs17250409	1.00[ASN][1000 genomes]
rs2012407	1.00[ASN][1000 genomes]
rs2218870	1.00[ASN][1000 genomes]
rs2405530	1.00[ASN][1000 genomes]
rs2923630	1.00[ASN][1000 genomes]
rs2923631	1.00[ASN][1000 genomes]
rs2923632	1.00[ASN][1000 genomes]
rs2923636	1.00[ASN][1000 genomes]
rs2923637	1.00[ASN][1000 genomes]
rs2923638	1.00[ASN][1000 genomes]
rs2923639	1.00[ASN][1000 genomes]
rs2923640	1.00[ASN][1000 genomes]
rs2923641	1.00[ASN][1000 genomes]
rs2981315	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981330	1.00[ASN][1000 genomes]
rs2981331	1.00[ASN][1000 genomes]
rs2981332	1.00[ASN][1000 genomes]
rs2981342	1.00[ASN][1000 genomes]
rs2981356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269538	1.00[ASN][1000 genomes]
rs4351412	1.00[ASN][1000 genomes]
rs4527864	1.00[ASN][1000 genomes]
rs4535735	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505637	1.00[ASN][1000 genomes]
rs62505639	1.00[ASN][1000 genomes]
rs62505640	1.00[ASN][1000 genomes]
rs6468305	1.00[ASN][1000 genomes]
rs6986169	1.00[ASN][1000 genomes]
rs7011522	1.00[ASN][1000 genomes]
rs7460698	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34936800-34939400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:34937400-34939200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:34937400-34939200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:34937400-34939200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:34937400-34939400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:34937400-34939400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:34937600-34939200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:34937800-34939200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:34938200-34939200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:34938400-34939400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links