Variant report

Variant	rs17252989
Chromosome Location	chr11:4943871-4943872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:4940074-4947279..11:4988858-5002113	Hela-S3	cervix:
2	chr11:4941970..4943945-chr11:4950687..4952588,2	K562	blood:

Variant related genes	Relation type
ENSG00000225003	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10768352	1.00[CHB][hapmap]
rs10836748	1.00[CHB][hapmap]
rs10836850	1.00[CHB][hapmap]
rs10836868	1.00[CHB][hapmap]
rs10836896	1.00[CHB][hapmap]
rs10836912	1.00[CHB][hapmap]
rs11034193	1.00[CHB][hapmap]
rs11034203	1.00[CHB][hapmap]
rs11034360	1.00[CHB][hapmap]
rs11034368	1.00[CHB][hapmap]
rs11034418	1.00[CHB][hapmap]
rs11034428	1.00[CHB][hapmap]
rs11034429	1.00[CHB][hapmap]
rs11034467	1.00[CHB][hapmap]
rs11034493	1.00[CHB][hapmap]
rs11034541	1.00[CHB][hapmap]
rs11034563	1.00[CHB][hapmap]
rs11034615	1.00[CHB][hapmap]
rs11600256	1.00[CHB][hapmap]
rs11601065	1.00[CHB][hapmap]
rs11602499	1.00[CHB][hapmap]
rs12273277	1.00[CHB][hapmap]
rs12276692	1.00[CHB][hapmap]
rs12291286	1.00[CHB][hapmap]
rs12360722	1.00[CHB][hapmap]
rs12361514	1.00[CHB][hapmap]
rs12361955	1.00[CHB][hapmap]
rs12364864	1.00[CHB][hapmap]
rs1347274	1.00[CHB][hapmap]
rs1368823	1.00[CHB][hapmap]
rs1368824	1.00[CHB][hapmap]
rs1433917	1.00[CHB][hapmap]
rs1583350	1.00[CHB][hapmap]
rs16906639	1.00[CHB][hapmap]
rs16907439	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17250052	1.00[CHB][hapmap]
rs17250577	1.00[CHB][hapmap]
rs17330155	1.00[CHB][hapmap]
rs17338048	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1816448	1.00[CHB][hapmap]
rs1865286	1.00[CHB][hapmap]
rs2570591	1.00[CHB][hapmap]
rs34123277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280136	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35264256	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35301592	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35666095	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910693	1.00[CHB][hapmap]
rs7118302	1.00[YRI][hapmap]
rs71480740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947422	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs7949235	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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