Variant report

Variant	rs4910693
Chromosome Location	chr11:4922016-4922017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10768352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10836748	1.00[CHB][hapmap]
rs10836850	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs10836851	0.81[CHD][hapmap]
rs10836868	1.00[CHB][hapmap]
rs10836896	1.00[CHB][hapmap]
rs10836912	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.83[ASN][1000 genomes]
rs10836949	1.00[YRI][hapmap]
rs10836950	1.00[YRI][hapmap]
rs10836954	1.00[YRI][hapmap]
rs10836955	1.00[YRI][hapmap]
rs10836956	1.00[YRI][hapmap]
rs11034193	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11034203	1.00[CHB][hapmap]
rs11034360	1.00[CHB][hapmap]
rs11034368	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11034418	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11034428	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs11034429	1.00[CHB][hapmap]
rs11034467	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[MEX][hapmap]
rs11034493	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs11034541	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs11034563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11034615	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11034672	1.00[YRI][hapmap]
rs11600256	1.00[CHB][hapmap]
rs11601065	1.00[CHB][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs11602499	1.00[CHB][hapmap]
rs12273277	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap]
rs12276692	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12291286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12291506	1.00[JPT][hapmap]
rs12360722	1.00[CHB][hapmap]
rs12361514	1.00[CHB][hapmap]
rs12361955	1.00[CHB][hapmap]
rs12364864	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1347274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1368823	1.00[CHB][hapmap]
rs1368824	1.00[CHB][hapmap]
rs1433917	1.00[CHB][hapmap]
rs1583350	1.00[CHB][hapmap]
rs16906639	1.00[CHB][hapmap]
rs17250052	1.00[CHB][hapmap]
rs17250577	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs17252989	1.00[CHB][hapmap]
rs17330155	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1816448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1865286	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[MEX][hapmap]
rs2570591	1.00[CHB][hapmap];0.81[CHD][hapmap];0.80[MEX][hapmap]
rs7116979	1.00[YRI][hapmap]
rs7949235	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv975826	chr11:4919908-4925361	Inactive region	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4910693	ST5	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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