Variant report

Variant	rs17330155
Chromosome Location	chr11:4911774-4911775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10768352	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs10836748	1.00[CHB][hapmap]
rs10836850	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs10836851	0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs10836856	0.81[ASN][1000 genomes]
rs10836868	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10836896	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10836912	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11034193	1.00[CHB][hapmap]
rs11034203	1.00[CHB][hapmap]
rs11034360	1.00[CHB][hapmap]
rs11034368	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11034418	1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs11034428	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11034429	1.00[CHB][hapmap]
rs11034467	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs11034493	1.00[CHB][hapmap];0.83[GIH][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs11034541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap]
rs11034563	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11034615	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11600256	1.00[CHB][hapmap]
rs11601065	1.00[CHB][hapmap]
rs11602499	1.00[CHB][hapmap]
rs12273277	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12276692	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12291286	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12360722	1.00[CHB][hapmap]
rs12361514	1.00[CHB][hapmap]
rs12361955	1.00[CHB][hapmap]
rs12364864	1.00[CHB][hapmap]
rs1347274	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1368823	1.00[CHB][hapmap]
rs1368824	1.00[CHB][hapmap];0.88[YRI][hapmap]
rs1433917	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs1583350	1.00[CHB][hapmap]
rs16906639	1.00[CHB][hapmap]
rs17250052	1.00[CHB][hapmap]
rs17250577	1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs17252989	1.00[CHB][hapmap]
rs1816448	1.00[CHB][hapmap]
rs1865286	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap]
rs2570591	1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap]
rs4910693	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs7949235	1.00[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv467666	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv553184	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17330155	ZNF214	cis	parietal	SCAN
rs17330155	OR10A5	cis	cerebellum	SCAN
rs17330155	FXC1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4911000-4913800	Enhancers	K562	blood
2	chr11:4911400-4911800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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