Variant report

Variant	rs17265350
Chromosome Location	chr2:183360081-183360082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11883669	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11884886	0.92[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs11892848	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs12616179	0.82[AMR][1000 genomes]
rs12616229	0.82[AMR][1000 genomes]
rs12622605	0.82[AMR][1000 genomes]
rs12623018	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12996626	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13008937	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13036034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1430142	0.89[EUR][1000 genomes]
rs1430143	0.89[EUR][1000 genomes]
rs1430144	0.88[EUR][1000 genomes]
rs1430145	0.92[CEU][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs1430150	0.89[CEU][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16823317	0.84[JPT][hapmap]
rs17265294	0.84[CEU][hapmap]
rs1835339	0.81[AMR][1000 genomes]
rs2099185	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs2303890	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2368296	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368297	0.88[CEU][hapmap]
rs2368298	0.87[CEU][hapmap]
rs2368299	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2887208	0.89[CEU][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs2887217	0.89[CEU][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34245807	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35182213	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35361731	0.82[AMR][1000 genomes]
rs35828806	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4480955	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4629124	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4666586	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4666587	0.88[CEU][hapmap]
rs4666844	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4666846	0.88[CEU][hapmap]
rs4666851	0.82[AMR][1000 genomes]
rs55893866	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55986741	0.84[EUR][1000 genomes]
rs67259847	0.83[AMR][1000 genomes]
rs6740244	0.89[EUR][1000 genomes]
rs6758298	0.82[AMR][1000 genomes]
rs6760589	0.84[EUR][1000 genomes]
rs7563753	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7578703	0.84[CEU][hapmap]
rs7601804	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183355000-183364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:183358600-183361400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:183360000-183361200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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