Variant report

Variant	rs34245807
Chromosome Location	chr2:183382703-183382704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183381297..183382810-chr2:183385812..183388467,2	K562	blood:

Variant related genes	Relation type
ENSG00000115252	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11884886	0.81[EUR][1000 genomes]
rs12616179	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12616229	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12622605	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12623018	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12996626	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13008937	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13036034	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1430142	0.81[EUR][1000 genomes]
rs1430143	0.81[EUR][1000 genomes]
rs1430144	0.80[EUR][1000 genomes]
rs1430150	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17265350	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1835339	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2099185	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2303890	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2368296	0.82[ASN][1000 genomes]
rs2887208	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2887217	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35182213	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35361731	0.85[AMR][1000 genomes]
rs35828806	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4480955	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4629124	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4666586	0.82[ASN][1000 genomes]
rs4666844	0.82[ASN][1000 genomes]
rs4666851	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55893866	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67259847	0.81[AMR][1000 genomes]
rs6740244	0.81[EUR][1000 genomes]
rs6758298	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7563753	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183371800-183384600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:183376600-183387200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:183377000-183385000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:183379000-183384800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:183381200-183383000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:183382000-183382800	Enhancers	Fetal Brain Female	brain
8	chr2:183382200-183383400	Enhancers	Brain Hippocampus Middle	brain
9	chr2:183382200-183383800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:183382600-183382800	Enhancers	Brain Angular Gyrus	brain

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