Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1000598	0.83[YRI][hapmap]
rs12438431	0.86[YRI][hapmap]
rs12906423	0.82[EUR][1000 genomes]
rs12908081	0.89[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12911564	0.81[EUR][1000 genomes]
rs12915295	0.81[EUR][1000 genomes]
rs12915825	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12916268	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13379947	0.89[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs1425270	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs17271151	0.92[YRI][hapmap]
rs1981916	0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1981917	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2414755	0.89[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3743297	0.89[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4283171	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4587915	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs4774422	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775445	0.85[YRI][hapmap]
rs4775453	0.89[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs7170293	0.88[JPT][hapmap]
rs748669	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8032681	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8033816	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62131600-62133000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:62132000-62133000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:62132400-62159000	Weak transcription	HSMM	muscle
4	chr15:62132400-62171200	Weak transcription	HMEC	breast
5	chr15:62132600-62133000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:62132800-62133000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:62132800-62146600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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