Variant report

Variant	rs4774422
Chromosome Location	chr15:62133036-62133037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12906423	0.85[EUR][1000 genomes]
rs12908081	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12911564	0.84[EUR][1000 genomes]
rs12915825	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12916268	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13379947	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17271144	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981916	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1981917	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2414755	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3743297	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4283171	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4587915	0.80[EUR][1000 genomes]
rs4775453	0.85[EUR][1000 genomes]
rs748669	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8032681	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62132400-62159000	Weak transcription	HSMM	muscle
2	chr15:62132400-62171200	Weak transcription	HMEC	breast
3	chr15:62132800-62146600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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