Variant report

Variant	rs17275598
Chromosome Location	chr4:152568478-152568479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152568195..152570506-chr4:152573252..152576175,2	K562	blood:

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10007653	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10021407	0.89[EUR][1000 genomes]
rs10022023	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10026670	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10033405	0.87[EUR][1000 genomes]
rs11099823	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11723395	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11723438	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11726892	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11729136	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11736116	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11931934	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11932059	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11932178	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11939356	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11940881	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11941034	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11944139	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11946622	0.92[EUR][1000 genomes]
rs12645029	1.00[YRI][hapmap]
rs12647566	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12648420	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650655	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12651635	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1473305	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1561916	0.80[EUR][1000 genomes]
rs17275536	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17275577	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17360371	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17360385	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1822346	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1822347	0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1899549	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1962910	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1978955	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2120098	0.87[EUR][1000 genomes]
rs2165789	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2406976	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2407069	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28454076	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28602726	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28608620	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4235221	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696094	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696095	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696096	0.89[EUR][1000 genomes]
rs4696097	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4696098	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4696099	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696100	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696101	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696102	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696103	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696266	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696267	0.89[EUR][1000 genomes]
rs4696268	0.85[CHB][hapmap];0.89[EUR][1000 genomes]
rs4696269	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4696270	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4696271	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696272	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696274	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696275	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696276	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696278	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696279	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696280	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696281	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696288	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4696289	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs55808836	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55932132	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55977324	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56319216	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62327266	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62327267	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62327268	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62327269	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62327270	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62327271	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62327272	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62327273	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62327274	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62327275	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62327277	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62327278	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62327349	0.82[EUR][1000 genomes]
rs62327350	0.82[EUR][1000 genomes]
rs62329084	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62329087	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62329088	0.89[EUR][1000 genomes]
rs62329090	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62329091	0.89[EUR][1000 genomes]
rs62329092	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62329101	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6535806	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66852535	0.89[EUR][1000 genomes]
rs6811676	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6816471	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6831810	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6833814	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6836249	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6836343	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6839802	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6853955	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6858483	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs718800	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs718801	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72728179	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72728182	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72730104	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7664663	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7674244	0.85[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7678080	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7683134	0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7685697	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7689266	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7692700	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7695412	0.86[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7695866	0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs875667	0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs875668	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9884167	0.89[EUR][1000 genomes]
rs9884486	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152544000-152570600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:152544400-152570600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152545600-152578600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:152546400-152570600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:152551000-152570800	Weak transcription	Lung	lung
6	chr4:152551000-152570800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:152554000-152573800	Weak transcription	Psoas Muscle	Psoas
8	chr4:152561000-152570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:152561000-152579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:152561400-152570600	Weak transcription	Gastric	stomach
11	chr4:152562600-152570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:152562600-152577400	Weak transcription	HMEC	breast
13	chr4:152562800-152570200	Weak transcription	NHEK	skin
14	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
15	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
16	chr4:152565600-152572600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:152565800-152570800	Weak transcription	Ovary	ovary
18	chr4:152566000-152577200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:152566200-152570400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:152566400-152570600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:152567000-152568600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr4:152567000-152569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:152567000-152571000	Weak transcription	Fetal Stomach	stomach
24	chr4:152567200-152571800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr4:152567600-152568600	Strong transcription	Colonic Mucosa	Colon
27	chr4:152567600-152568600	Strong transcription	Pancreas	Pancrea
28	chr4:152567600-152569200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr4:152567800-152568600	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr4:152567800-152568600	Strong transcription	Esophagus	oesophagus
31	chr4:152567800-152568600	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:152567800-152569200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr4:152568000-152569400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:152568000-152570600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:152568000-152570600	Weak transcription	Fetal Intestine Small	intestine
37	chr4:152568200-152571600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr4:152568200-152577800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr4:152568400-152570000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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