Variant report

Variant	rs17360385
Chromosome Location	chr4:152587970-152587971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152586811..152588784-chr4:152594944..152597793,2	MCF-7	breast:
2	chr4:152566191..152568403-chr4:152585457..152588104,2	K562	blood:

Variant related genes	Relation type
ENSG00000251455	Chromatin interaction
ENSG00000059691	Chromatin interaction

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10007653	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10021407	0.86[EUR][1000 genomes]
rs10022023	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10026670	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10033405	0.84[EUR][1000 genomes]
rs11099823	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11723395	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11723438	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11726892	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11729136	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11736116	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11931934	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11932059	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11932178	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11939356	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11940881	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11941034	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11944139	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11946622	0.88[EUR][1000 genomes]
rs12641433	0.80[EUR][1000 genomes]
rs12641438	0.80[EUR][1000 genomes]
rs12645029	0.84[EUR][1000 genomes]
rs12647420	0.80[EUR][1000 genomes]
rs12647462	0.80[EUR][1000 genomes]
rs12647465	0.80[EUR][1000 genomes]
rs12647566	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12648420	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12650655	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12651635	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1473305	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17275536	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17275577	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17275598	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17360371	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1822346	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1822347	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1899549	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1962910	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1978955	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2120098	0.84[EUR][1000 genomes]
rs2165789	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2406974	0.84[EUR][1000 genomes]
rs2406976	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2407069	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28454076	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28602726	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28608620	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28659854	0.80[EUR][1000 genomes]
rs4235221	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696094	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4696095	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4696096	0.86[EUR][1000 genomes]
rs4696097	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4696098	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4696099	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696100	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696101	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696102	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696103	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4696266	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4696267	0.86[EUR][1000 genomes]
rs4696268	0.86[EUR][1000 genomes]
rs4696269	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4696270	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4696271	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4696272	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696274	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696275	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696276	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4696278	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4696279	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4696280	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4696281	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4696288	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4696289	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55808836	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55932132	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55977324	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56319216	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62327266	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327267	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62327268	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62327269	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62327270	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62327271	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62327272	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62327273	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62327274	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62327275	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62327277	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62327278	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62327349	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62327350	0.86[EUR][1000 genomes]
rs62329084	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62329087	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62329088	0.86[EUR][1000 genomes]
rs62329090	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62329091	0.86[EUR][1000 genomes]
rs62329092	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62329101	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6535806	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66852535	0.86[EUR][1000 genomes]
rs6811676	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6816002	0.84[EUR][1000 genomes]
rs6816471	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6831810	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6833814	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6836249	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6836343	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6839802	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6853955	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6858483	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs718800	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs718801	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72728179	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72728182	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72730104	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7664663	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7674244	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7678080	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7683134	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7685697	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7689266	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7692700	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7695412	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7695866	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs875667	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs875668	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9884167	0.86[EUR][1000 genomes]
rs9884486	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv4551	chr4:152582617-152627367	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
3	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:152571600-152595000	Weak transcription	HepG2	liver
6	chr4:152578400-152595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:152579200-152597400	Weak transcription	Liver	Liver
8	chr4:152579600-152592200	Weak transcription	Right Ventricle	heart
9	chr4:152579800-152592800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:152580000-152595200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:152580200-152596000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:152580800-152595800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:152580800-152596800	Weak transcription	Primary T cells from cord blood	blood
14	chr4:152581000-152592000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:152581200-152602800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:152581200-152608400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:152581600-152595000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:152581800-152595600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:152582400-152588000	Weak transcription	Psoas Muscle	Psoas
20	chr4:152582400-152588200	Weak transcription	Fetal Kidney	kidney
21	chr4:152582400-152592600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:152582400-152595000	Weak transcription	Lung	lung
23	chr4:152582400-152595800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:152583000-152588000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:152583000-152591800	Weak transcription	Adipose Nuclei	Adipose
26	chr4:152583200-152588800	Weak transcription	Right Atrium	heart
27	chr4:152583200-152596000	Weak transcription	Spleen	Spleen
28	chr4:152583600-152589600	Weak transcription	Fetal Brain Female	brain
29	chr4:152583800-152595200	Weak transcription	Esophagus	oesophagus
30	chr4:152584600-152589800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:152584600-152595400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr4:152584800-152595800	Weak transcription	Fetal Intestine Large	intestine
33	chr4:152585000-152590000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:152585200-152596000	Weak transcription	Colonic Mucosa	Colon
35	chr4:152585400-152589400	Weak transcription	HMEC	breast
36	chr4:152585600-152592000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:152585600-152594400	Weak transcription	Fetal Stomach	stomach
38	chr4:152585600-152594800	Weak transcription	Ovary	ovary
39	chr4:152585600-152628600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr4:152585800-152589800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:152585800-152591800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:152585800-152592000	Weak transcription	Fetal Intestine Small	intestine
43	chr4:152585800-152592600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:152585800-152595000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr4:152585800-152595200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:152585800-152596200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr4:152585800-152600400	Weak transcription	Gastric	stomach
48	chr4:152585800-152640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr4:152586000-152589200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:152586000-152596600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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