Variant report

Variant	rs17278131
Chromosome Location	chr3:150086234-150086235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150068040..150070042-chr3:150085937..150088892,3	MCF-7	breast:
2	chr3:150081211..150094856-chr3:150124384..150132921,41	MCF-7	breast:
3	chr3:150081035..150094397-chr3:150122156..150134666,40	MCF-7	breast:
4	chr3:150081232..150084545-chr3:150085072..150089813,5	K562	blood:
5	chr3:150072020..150072758-chr3:150086228..150086770,2	MCF-7	breast:
6	chr3:150074801..150076915-chr3:150084474..150086782,2	MCF-7	breast:
7	chr3:150061806..150067641-chr3:150085085..150089827,11	MCF-7	breast:
8	chr3:150082769..150087099-chr3:150088300..150090870,4	K562	blood:
9	chr3:150081232..150084840-chr3:150085072..150088254,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10513368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10513369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10513370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10513371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10513372	0.86[ASN][1000 genomes]
rs10513375	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11713072	0.89[ASN][1000 genomes]
rs11714123	1.00[JPT][hapmap]
rs11925759	0.81[ASN][1000 genomes]
rs11928577	0.86[ASN][1000 genomes]
rs11928948	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13066114	0.89[ASN][1000 genomes]
rs13068946	0.89[ASN][1000 genomes]
rs13073230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13076419	0.86[ASN][1000 genomes]
rs13084712	0.86[ASN][1000 genomes]
rs13317818	0.89[ASN][1000 genomes]
rs1376027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28571974	0.86[ASN][1000 genomes]
rs28587291	0.89[ASN][1000 genomes]
rs2868430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs34106738	0.86[ASN][1000 genomes]
rs34156311	0.93[ASN][1000 genomes]
rs34419133	0.86[ASN][1000 genomes]
rs34503712	0.86[ASN][1000 genomes]
rs34647320	0.89[ASN][1000 genomes]
rs34983941	0.86[ASN][1000 genomes]
rs35234277	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3749400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3811719	0.89[ASN][1000 genomes]
rs61734437	0.89[ASN][1000 genomes]
rs66816665	0.89[ASN][1000 genomes]
rs67073112	0.89[ASN][1000 genomes]
rs6791546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6799106	0.89[ASN][1000 genomes]
rs6799981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73165716	0.86[ASN][1000 genomes]
rs7614772	0.89[ASN][1000 genomes]
rs7618493	0.89[ASN][1000 genomes]
rs7620193	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7621019	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7623100	0.86[ASN][1000 genomes]
rs9827736	0.96[ASN][1000 genomes]
rs9844735	0.89[ASN][1000 genomes]
rs9875752	0.89[ASN][1000 genomes]
rs9879140	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150074000-150086600	Weak transcription	HUVEC	blood vessel
2	chr3:150081200-150088200	Weak transcription	Stomach Mucosa	stomach
3	chr3:150082400-150089400	Weak transcription	HepG2	liver
4	chr3:150083200-150088000	Weak transcription	Esophagus	oesophagus
5	chr3:150083200-150088200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:150083200-150088200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:150083400-150086600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:150083400-150086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:150083600-150087200	Weak transcription	HSMMtube	muscle
10	chr3:150083800-150086800	Weak transcription	HMEC	breast
11	chr3:150083800-150087400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:150083800-150087400	Weak transcription	NH-A	brain
13	chr3:150084000-150086600	Weak transcription	K562	blood
14	chr3:150084000-150086800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:150084000-150087800	Weak transcription	HSMM	muscle
16	chr3:150084200-150086600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:150084200-150086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:150084200-150086600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:150084200-150086600	Weak transcription	NHEK	skin
20	chr3:150084600-150087800	Weak transcription	Fetal Kidney	kidney
21	chr3:150084600-150088000	Weak transcription	Right Atrium	heart
22	chr3:150085000-150087600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr3:150085200-150087800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:150085200-150088000	Enhancers	Hela-S3	cervix
25	chr3:150085400-150088000	Enhancers	NHDF-Ad	bronchial
26	chr3:150085600-150087400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:150085600-150088000	Enhancers	Osteobl	bone
28	chr3:150085800-150087000	Enhancers	NHLF	lung
29	chr3:150085800-150088800	Enhancers	Placenta	Placenta
30	chr3:150086000-150086400	Weak transcription	A549	lung
31	chr3:150086000-150087200	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:150086000-150087400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:150086000-150087600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr3:150086000-150087800	Weak transcription	Fetal Lung	lung
35	chr3:150086200-150087200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:150086200-150087800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:150086200-150102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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