Variant report

Variant	rs10513368
Chromosome Location	chr3:150179597-150179598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150161437..150164361-chr3:150177482..150180288,2	K562	blood:
2	chr3:150169139..150170858-chr3:150178413..150180525,2	MCF-7	breast:
3	chr3:150162355..150164393-chr3:150179052..150181274,2	MCF-7	breast:
4	chr3:150124596..150127596-chr3:150177344..150180987,4	MCF-7	breast:
5	chr3:150124105..150129008-chr3:150174357..150179992,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10513369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10513370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10513371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10513372	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513375	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713072	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11714034	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11714123	1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11925759	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11928577	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928948	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066114	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13067910	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13068946	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13073230	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13076419	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089766	0.89[EUR][1000 genomes]
rs13317818	0.89[ASN][1000 genomes]
rs1376027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584586	0.80[ASW][hapmap]
rs17278131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28571974	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587291	0.89[ASN][1000 genomes]
rs2868430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34106738	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34156311	0.93[ASN][1000 genomes]
rs34419133	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34503712	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34647320	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34983941	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019980	0.89[EUR][1000 genomes]
rs35234277	0.82[ASN][1000 genomes]
rs35598887	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3749400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3811719	0.89[ASN][1000 genomes]
rs61734437	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66816665	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67073112	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67100311	0.89[EUR][1000 genomes]
rs6791546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799106	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6799981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73165716	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73167540	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7614772	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618493	0.89[ASN][1000 genomes]
rs7620193	0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7621019	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7623100	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827736	0.82[ASN][1000 genomes]
rs9844735	0.89[ASN][1000 genomes]
rs9875752	0.89[ASN][1000 genomes]
rs9879140	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150165600-150187200	Weak transcription	Small Intestine	intestine
2	chr3:150166000-150186200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:150166400-150185600	Weak transcription	Lung	lung
4	chr3:150172000-150184800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:150172200-150179800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:150172600-150191600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:150173400-150181000	Weak transcription	Fetal Heart	heart
8	chr3:150173800-150186400	Weak transcription	Colonic Mucosa	Colon
9	chr3:150174600-150186400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:150175000-150179600	Weak transcription	Fetal Brain Male	brain
11	chr3:150175000-150179600	Strong transcription	HSMM	muscle
12	chr3:150175000-150184200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:150176000-150180400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:150176400-150182200	Weak transcription	Fetal Stomach	stomach
15	chr3:150176600-150186400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:150176600-150187000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:150176800-150180000	Weak transcription	Gastric	stomach
18	chr3:150176800-150180000	Weak transcription	Spleen	Spleen
19	chr3:150176800-150180600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:150176800-150180600	Weak transcription	GM12878-XiMat	blood
21	chr3:150176800-150180800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:150176800-150183000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:150176800-150183200	Weak transcription	Ovary	ovary
24	chr3:150176800-150183600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:150176800-150183600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:150176800-150184400	Weak transcription	Fetal Brain Female	brain
27	chr3:150176800-150185000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr3:150176800-150185000	Weak transcription	NHEK	skin
29	chr3:150176800-150186400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:150176800-150186800	Weak transcription	Primary T cells from cord blood	blood
31	chr3:150176800-150187000	Weak transcription	Fetal Intestine Large	intestine
32	chr3:150176800-150187000	Weak transcription	Left Ventricle	heart
33	chr3:150176800-150187000	Weak transcription	Pancreas	Pancrea
34	chr3:150176800-150187000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:150176800-150187200	Weak transcription	Brain Anterior Caudate	brain
36	chr3:150176800-150187200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:150176800-150187200	Weak transcription	Fetal Muscle Leg	muscle
38	chr3:150176800-150187200	Weak transcription	Right Ventricle	heart
39	chr3:150176800-150187200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:150176800-150187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:150176800-150187400	Weak transcription	Thymus	Thymus
42	chr3:150176800-150187600	Weak transcription	Esophagus	oesophagus
43	chr3:150176800-150187600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr3:150177000-150181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:150177000-150200600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:150177200-150179800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:150177200-150179800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:150177200-150180000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:150177200-150181800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:150177200-150183000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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