Variant report
Variant | rs13089766 |
---|---|
Chromosome Location | chr3:150203142-150203143 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10513368 | 0.89[EUR][1000 genomes] |
rs10513369 | 0.87[EUR][1000 genomes] |
rs10513370 | 0.87[EUR][1000 genomes] |
rs10513371 | 0.87[EUR][1000 genomes] |
rs10513372 | 0.87[EUR][1000 genomes] |
rs10513375 | 0.87[EUR][1000 genomes] |
rs11713072 | 0.87[EUR][1000 genomes] |
rs11714034 | 0.90[EUR][1000 genomes] |
rs11714123 | 0.90[EUR][1000 genomes] |
rs11916060 | 0.85[ASN][1000 genomes] |
rs11922849 | 0.85[ASN][1000 genomes] |
rs11925759 | 0.88[EUR][1000 genomes] |
rs11928577 | 0.87[EUR][1000 genomes] |
rs11928948 | 0.87[EUR][1000 genomes] |
rs13061361 | 0.85[ASN][1000 genomes] |
rs13066114 | 0.85[EUR][1000 genomes] |
rs13067910 | 0.88[EUR][1000 genomes] |
rs13068946 | 0.87[EUR][1000 genomes] |
rs13076419 | 0.87[EUR][1000 genomes] |
rs13089357 | 0.90[ASN][1000 genomes] |
rs13095953 | 0.85[ASN][1000 genomes] |
rs1376027 | 0.87[EUR][1000 genomes] |
rs28571974 | 0.87[EUR][1000 genomes] |
rs2868430 | 0.87[EUR][1000 genomes] |
rs34106738 | 0.91[EUR][1000 genomes] |
rs34419133 | 0.89[EUR][1000 genomes] |
rs34503712 | 0.87[EUR][1000 genomes] |
rs34647320 | 0.86[EUR][1000 genomes] |
rs34983941 | 0.87[EUR][1000 genomes] |
rs35019980 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35310473 | 0.85[ASN][1000 genomes] |
rs35408555 | 0.90[ASN][1000 genomes] |
rs35598887 | 0.82[EUR][1000 genomes] |
rs3749400 | 0.87[EUR][1000 genomes] |
rs61734437 | 0.84[EUR][1000 genomes] |
rs66816665 | 0.87[EUR][1000 genomes] |
rs67073112 | 0.87[EUR][1000 genomes] |
rs67100311 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6791546 | 0.87[EUR][1000 genomes] |
rs6799106 | 0.87[EUR][1000 genomes] |
rs6799981 | 0.87[EUR][1000 genomes] |
rs73165716 | 0.87[EUR][1000 genomes] |
rs73167540 | 0.84[EUR][1000 genomes] |
rs7614772 | 0.87[EUR][1000 genomes] |
rs7617865 | 0.85[ASN][1000 genomes] |
rs7623100 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv877645 | chr3:150103135-150212698 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
2 | nsv532662 | chr3:150180747-150633414 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:150188200-150218800 | Weak transcription | HSMM | muscle |
2 | chr3:150194600-150204800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr3:150199000-150212400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
4 | chr3:150203000-150203400 | ZNF genes & repeats | Aorta | Aorta |