Variant report

Variant	rs13061361
Chromosome Location	chr3:150226416-150226417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11916060	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922849	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071009	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089766	0.85[ASN][1000 genomes]
rs13095953	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019980	0.85[ASN][1000 genomes]
rs35310473	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924509	0.88[ASN][1000 genomes]
rs67100311	0.82[ASN][1000 genomes]
rs7617865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150214000-150233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150226000-150226600	Enhancers	NHEK	skin
3	chr3:150226200-150226600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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