Variant report

Variant	rs11922849
Chromosome Location	chr3:150221724-150221725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150128973..150131899-chr3:150220806..150223436,2	K562	blood:
2	chr3:150214841..150217041-chr3:150221027..150224321,3	MCF-7	breast:
3	chr3:150124151..150127830-chr3:150221704..150224000,3	K562	blood:
4	chr3:150215871..150217428-chr3:150221046..150222559,2	MCF-7	breast:
5	chr3:150214882..150218189-chr3:150218353..150222806,4	K562	blood:
6	chr3:150221351..150223518-chr3:150228291..150229906,2	K562	blood:
7	chr3:150214882..150216583-chr3:150220861..150223172,3	K562	blood:
8	chr3:150220540..150224199-chr3:150249141..150252700,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11916060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061361	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071009	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089766	0.85[ASN][1000 genomes]
rs13095953	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019980	0.85[ASN][1000 genomes]
rs35310473	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924509	0.88[ASN][1000 genomes]
rs67100311	0.82[ASN][1000 genomes]
rs73167594	0.80[AMR][1000 genomes]
rs73167595	0.80[AMR][1000 genomes]
rs73169809	0.80[AMR][1000 genomes]
rs73169813	0.80[AMR][1000 genomes]
rs73169817	0.80[AMR][1000 genomes]
rs7617865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150214000-150233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150220600-150222200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:150221200-150222000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links