Variant report

Variant	rs13095953
Chromosome Location	chr3:150214810-150214811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150124942..150128625-chr3:150212182..150215161,4	MCF-7	breast:
2	chr3:150127999..150131136-chr3:150212098..150216943,5	MCF-7	breast:
3	chr3:150139889..150142772-chr3:150213958..150216741,2	K562	blood:
4	chr3:150125461..150127974-chr3:150211949..150215332,4	K562	blood:
5	chr3:150146836..150150944-chr3:150211993..150216271,5	K562	blood:
6	chr3:150124804..150129560-chr3:150211663..150216825,11	K562	blood:
7	chr3:150124117..150127899-chr3:150211651..150217297,6	MCF-7	breast:
8	chr3:150214669..150217465-chr6:26198086..26200944,2	MCF-7	breast:
9	chr3:150128686..150131461-chr3:150213546..150215389,3	K562	blood:
10	chr3:150142988..150145486-chr3:150212475..150215228,2	MCF-7	breast:
11	chr3:150128686..150130712-chr3:150211662..150215340,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000196866	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000196428	Chromatin interaction
ENSG00000197846	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11916060	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922849	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061361	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089766	0.85[ASN][1000 genomes]
rs35019980	0.85[ASN][1000 genomes]
rs35310473	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924509	0.88[ASN][1000 genomes]
rs67100311	0.82[ASN][1000 genomes]
rs7617865	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150188200-150218800	Weak transcription	HSMM	muscle
2	chr3:150210600-150218600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:150213200-150215000	Weak transcription	Hela-S3	cervix
4	chr3:150213200-150215600	Weak transcription	NHEK	skin
5	chr3:150214000-150215600	Weak transcription	NHLF	lung
6	chr3:150214000-150233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:150214800-150215000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:150214800-150216200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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