Variant report

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150124942..150128625-chr3:150212182..150215161,4	MCF-7	breast:
2	chr3:150127999..150131136-chr3:150212098..150216943,5	MCF-7	breast:
3	chr3:150003831..150004823-chr3:150212697..150213907,4	MCF-7	breast:
4	chr3:150133801..150136735-chr3:150211220..150213846,2	MCF-7	breast:
5	chr3:150177411..150178403-chr3:150213093..150214075,2	K562	blood:
6	chr3:150125461..150127974-chr3:150211949..150215332,4	K562	blood:
7	chr3:150146836..150150944-chr3:150211993..150216271,5	K562	blood:
8	chr3:149956546..149957511-chr3:150213095..150213996,3	K562	blood:
9	chr3:150124804..150129560-chr3:150211663..150216825,11	K562	blood:
10	chr3:150004078..150005022-chr3:150213096..150214042,7	K562	blood:
11	chr3:150124117..150127899-chr3:150211651..150217297,6	MCF-7	breast:
12	chr3:149945635..149946202-chr3:150213454..150214121,3	K562	blood:
13	chr3:149956880..149957796-chr3:150213090..150213976,2	MCF-7	breast:
14	chr3:150128686..150131461-chr3:150213546..150215389,3	K562	blood:
15	chr3:150021343..150022241-chr3:150213070..150213965,4	MCF-7	breast:
16	chr3:150142988..150145486-chr3:150212475..150215228,2	MCF-7	breast:
17	chr3:150021287..150022177-chr3:150212869..150214032,8	MCF-7	breast:
18	chr17:43472054..43473039-chr3:150213268..150214033,2	K562	blood:
19	chr3:150128686..150130712-chr3:150211662..150215340,3	MCF-7	breast:
20	chr3:150127483..150128027-chr3:150213130..150214048,2	MCF-7	breast:
21	chr3:150063831..150066264-chr3:150212112..150214058,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11916060	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922849	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061361	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071009	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089766	0.85[ASN][1000 genomes]
rs13095953	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019980	0.85[ASN][1000 genomes]
rs3924509	0.88[ASN][1000 genomes]
rs67100311	0.82[ASN][1000 genomes]
rs7617865	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150188200-150218800	Weak transcription	HSMM	muscle
2	chr3:150210600-150218600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:150212200-150214000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:150212200-150214000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:150213000-150214000	Enhancers	NHLF	lung
6	chr3:150213200-150214400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:150213200-150214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:150213200-150214800	Weak transcription	K562	blood
9	chr3:150213200-150215000	Weak transcription	Hela-S3	cervix
10	chr3:150213200-150215600	Weak transcription	NHEK	skin
11	chr3:150213800-150214000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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