Variant report

Variant	rs73167540
Chromosome Location	chr3:150164077-150164078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150154296..150156771-chr3:150162812..150165621,2	MCF-7	breast:
2	chr3:150125330..150128900-chr3:150162907..150168897,9	MCF-7	breast:
3	chr3:150162355..150164393-chr3:150179052..150181274,2	MCF-7	breast:
4	chr3:150161430..150164240-chr3:150167006..150169731,3	K562	blood:
5	chr3:150161437..150164361-chr3:150177482..150180288,2	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10513368	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10513369	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10513370	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10513371	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10513372	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10513375	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713072	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11714034	0.91[EUR][1000 genomes]
rs11714123	0.91[EUR][1000 genomes]
rs11925759	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11928577	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11928948	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13066114	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13067910	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13068946	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13073230	0.82[ASN][1000 genomes]
rs13076419	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13089766	0.84[EUR][1000 genomes]
rs1376027	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28571974	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2868430	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34106738	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34156311	0.82[ASN][1000 genomes]
rs34419133	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34503712	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34647320	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34983941	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35019980	0.84[EUR][1000 genomes]
rs35598887	0.92[EUR][1000 genomes]
rs3749400	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61734437	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66816665	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67073112	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67100311	0.84[EUR][1000 genomes]
rs6791546	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6799106	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6799981	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73165716	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7614772	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7623100	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150131000-150166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150132400-150175000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:150132400-150175000	Weak transcription	Placenta	Placenta
4	chr3:150134600-150174800	Weak transcription	Dnd41	blood
5	chr3:150135000-150175600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:150137200-150176200	Weak transcription	HepG2	liver
7	chr3:150140000-150171800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:150140000-150176200	Weak transcription	Fetal Stomach	stomach
9	chr3:150141400-150175200	Weak transcription	GM12878-XiMat	blood
10	chr3:150141800-150164400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:150141800-150165000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:150141800-150166800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:150144200-150179000	Weak transcription	Aorta	Aorta
14	chr3:150146000-150165000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:150147000-150167200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:150148400-150165200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:150149600-150176000	Weak transcription	Fetal Brain Female	brain
18	chr3:150151400-150171200	Weak transcription	Brain Anterior Caudate	brain
19	chr3:150151400-150171600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:150151800-150165000	Weak transcription	Ovary	ovary
21	chr3:150151800-150167000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:150152200-150164400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:150152200-150166000	Weak transcription	Lung	lung
24	chr3:150152200-150168800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:150152200-150171200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:150152400-150165200	Weak transcription	Fetal Heart	heart
27	chr3:150152400-150166800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:150152800-150165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:150153000-150175600	Weak transcription	Right Ventricle	heart
30	chr3:150153600-150178200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:150153800-150176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:150154000-150175800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:150154200-150176000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:150154600-150165200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:150154800-150164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:150154800-150164800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:150154800-150165600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:150157800-150173000	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:150158000-150165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:150158600-150165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:150158600-150178200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:150159200-150166200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:150159600-150164400	Weak transcription	Stomach Mucosa	stomach
44	chr3:150159600-150165200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:150159800-150165000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:150159800-150171600	Weak transcription	Brain Substantia Nigra	brain
47	chr3:150159800-150175600	Weak transcription	Thymus	Thymus
48	chr3:150159800-150176200	Weak transcription	Spleen	Spleen
49	chr3:150160000-150165200	Weak transcription	Left Ventricle	heart
50	chr3:150160200-150175800	Weak transcription	Fetal Muscle Trunk	muscle

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