Variant report

Variant	rs13073230
Chromosome Location	chr3:150110726-150110727
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150108770..150111443-chr3:150121754..150123865,2	K562	blood:
2	chr3:150109097..150111553-chr3:150125246..150129049,3	K562	blood:
3	chr3:150109757..150111553-chr3:150126706..150129049,2	K562	blood:
4	chr3:150108811..150111187-chr3:150116548..150119343,3	MCF-7	breast:
5	chr3:150109427..150111930-chr3:150114041..150117161,4	K562	blood:
6	chr3:150106073..150107680-chr3:150109280..150112020,2	MCF-7	breast:
7	chr3:150032815..150035276-chr3:150108966..150110924,2	MCF-7	breast:
8	chr3:150103049..150105345-chr3:150109294..150110988,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10513368	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10513369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs10513370	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10513371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10513372	0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs10513375	0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11713072	0.96[ASN][1000 genomes]
rs11714123	1.00[JPT][hapmap]
rs11925759	0.81[ASN][1000 genomes]
rs11928577	0.93[ASN][1000 genomes]
rs11928948	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs13066114	0.96[ASN][1000 genomes]
rs13067910	0.86[ASN][1000 genomes]
rs13068946	0.96[ASN][1000 genomes]
rs13076419	0.93[ASN][1000 genomes]
rs13084712	1.00[EUR][1000 genomes]
rs13317818	0.96[ASN][1000 genomes]
rs1376027	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs17278131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28571974	0.93[ASN][1000 genomes]
rs28587291	0.96[ASN][1000 genomes]
rs2868430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34106738	0.93[ASN][1000 genomes]
rs34156311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34419133	0.93[ASN][1000 genomes]
rs34503712	0.93[ASN][1000 genomes]
rs34647320	0.96[ASN][1000 genomes]
rs34983941	0.93[ASN][1000 genomes]
rs35234277	0.89[ASN][1000 genomes]
rs35598887	0.80[ASN][1000 genomes]
rs3749400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3811719	0.96[ASN][1000 genomes]
rs61734437	0.96[ASN][1000 genomes]
rs66816665	0.96[ASN][1000 genomes]
rs67073112	0.96[ASN][1000 genomes]
rs6791546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6799106	0.96[ASN][1000 genomes]
rs6799981	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs73165716	0.93[ASN][1000 genomes]
rs73167540	0.82[ASN][1000 genomes]
rs7614772	0.96[ASN][1000 genomes]
rs7618493	0.96[ASN][1000 genomes]
rs7620193	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7621019	0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7623100	0.93[ASN][1000 genomes]
rs9827736	0.89[ASN][1000 genomes]
rs9844735	0.96[ASN][1000 genomes]
rs9875752	0.96[ASN][1000 genomes]
rs9879140	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv1828464	chr3:150096071-150149868	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
2	chr3:150090800-150111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:150090800-150111000	Weak transcription	NHEK	skin
4	chr3:150097800-150111200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:150102800-150111400	Weak transcription	Fetal Intestine Large	intestine
6	chr3:150102800-150118200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:150103600-150112200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:150106800-150111200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:150107200-150112400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:150107600-150111000	Weak transcription	Pancreas	Pancrea
11	chr3:150107600-150114400	Weak transcription	Fetal Heart	heart
12	chr3:150108400-150111600	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:150109200-150112400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:150109200-150124400	Weak transcription	HSMM	muscle
15	chr3:150109200-150124600	Weak transcription	NHLF	lung
16	chr3:150109400-150114400	Weak transcription	HSMMtube	muscle
17	chr3:150109400-150114600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:150109600-150111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:150109600-150112400	Weak transcription	NHDF-Ad	bronchial
20	chr3:150109600-150114800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:150109600-150116800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:150109600-150121200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:150109800-150114600	Weak transcription	HUVEC	blood vessel

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