Variant report

Variant	rs13067910
Chromosome Location	chr3:150186939-150186940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150183043..150184831-chr3:150184961..150187685,2	MCF-7	breast:
2	chr3:150125474..150126977-chr3:150185415..150187191,2	K562	blood:
3	chr3:150185308..150188037-chr3:150190947..150194724,4	K562	blood:
4	chr3:150185308..150187363-chr3:150191883..150194072,2	K562	blood:
5	chr3:150179991..150182709-chr3:150186253..150188637,2	MCF-7	breast:
6	chr3:150126101..150131626-chr3:150185402..150190474,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10513368	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10513369	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10513370	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10513371	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10513372	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10513375	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11713072	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714034	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11714123	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11925759	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11928577	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11928948	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13066114	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13068946	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13073230	0.86[ASN][1000 genomes]
rs13076419	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13089766	0.88[EUR][1000 genomes]
rs13317818	0.83[ASN][1000 genomes]
rs1376027	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28571974	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28587291	0.83[ASN][1000 genomes]
rs2868430	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34106738	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34156311	0.86[ASN][1000 genomes]
rs34419133	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34503712	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34647320	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34983941	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35019980	0.88[EUR][1000 genomes]
rs35598887	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3749400	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3811719	0.83[ASN][1000 genomes]
rs61734437	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66816665	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67073112	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67100311	0.88[EUR][1000 genomes]
rs6791546	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6799106	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6799981	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73165716	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73167540	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7614772	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7618493	0.83[ASN][1000 genomes]
rs7620193	0.83[ASN][1000 genomes]
rs7621019	0.83[ASN][1000 genomes]
rs7623100	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9844735	0.83[ASN][1000 genomes]
rs9875752	0.83[ASN][1000 genomes]
rs9879140	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150165600-150187200	Weak transcription	Small Intestine	intestine
2	chr3:150172600-150191600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:150176600-150187000	Weak transcription	Fetal Intestine Small	intestine
4	chr3:150176800-150187000	Weak transcription	Fetal Intestine Large	intestine
5	chr3:150176800-150187000	Weak transcription	Left Ventricle	heart
6	chr3:150176800-150187000	Weak transcription	Pancreas	Pancrea
7	chr3:150176800-150187000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:150176800-150187200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:150176800-150187200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:150176800-150187200	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:150176800-150187200	Weak transcription	Right Ventricle	heart
12	chr3:150176800-150187200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:150176800-150187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:150176800-150187400	Weak transcription	Thymus	Thymus
15	chr3:150176800-150187600	Weak transcription	Esophagus	oesophagus
16	chr3:150176800-150187600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:150177000-150200600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:150177200-150187200	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:150177400-150187600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:150179000-150187000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:150179000-150187000	Weak transcription	HSMMtube	muscle
22	chr3:150179000-150187000	Weak transcription	Osteobl	bone
23	chr3:150179000-150187200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:150179000-150187600	Weak transcription	Fetal Thymus	thymus
25	chr3:150179200-150187200	Weak transcription	Aorta	Aorta
26	chr3:150179200-150187200	Weak transcription	Stomach Mucosa	stomach
27	chr3:150179200-150187400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:150179200-150201000	Weak transcription	Fetal Lung	lung
29	chr3:150180000-150192600	Weak transcription	Fetal Kidney	kidney
30	chr3:150183000-150187200	Weak transcription	Fetal Heart	heart
31	chr3:150184000-150187000	Weak transcription	NHDF-Ad	bronchial
32	chr3:150184400-150188400	Enhancers	HUVEC	blood vessel
33	chr3:150184800-150187000	Weak transcription	HSMM	muscle
34	chr3:150185000-150187000	Enhancers	NHEK	skin
35	chr3:150185000-150187400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr3:150185000-150188200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:150185200-150187000	Enhancers	A549	lung
38	chr3:150185200-150187000	Enhancers	HMEC	breast
39	chr3:150185400-150187000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:150185400-150188000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr3:150185600-150190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:150185800-150187000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:150185800-150188200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr3:150186000-150188400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr3:150186200-150187000	Enhancers	K562	blood
46	chr3:150186200-150187200	Enhancers	NH-A	brain
47	chr3:150186400-150187000	Enhancers	Hela-S3	cervix
48	chr3:150186400-150187200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:150186400-150187200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:150186400-150187200	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links