Variant report

Variant	rs1729715
Chromosome Location	chr4:74478887-74478888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1247584	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247585	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247586	1.00[AMR][1000 genomes]
rs1247589	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs1247590	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247595	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247597	0.85[AFR][1000 genomes]
rs1247598	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247599	0.94[AFR][1000 genomes]
rs1247600	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1247679	0.94[AFR][1000 genomes]
rs1261933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1528920	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1528921	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1729716	0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1745285	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1745288	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2476027	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55678226	1.00[AMR][1000 genomes]
rs6826233	1.00[AMR][1000 genomes]
rs72865466	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74465400-74483000	Weak transcription	Esophagus	oesophagus
2	chr4:74472200-74485600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:74472800-74483000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:74474400-74479800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:74474400-74481400	Genic enhancers	Fetal Thymus	thymus
6	chr4:74474800-74483200	Weak transcription	Small Intestine	intestine
7	chr4:74475600-74482600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:74475800-74481200	Weak transcription	Fetal Kidney	kidney
9	chr4:74476200-74484400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:74476400-74484600	Weak transcription	Fetal Intestine Large	intestine
11	chr4:74476600-74479600	Weak transcription	Gastric	stomach
12	chr4:74476800-74481000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:74476800-74482400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:74477200-74480800	Enhancers	Stomach Mucosa	stomach
15	chr4:74477200-74481400	Weak transcription	Fetal Intestine Small	intestine
16	chr4:74477200-74481600	Weak transcription	HepG2	liver
17	chr4:74477400-74482400	Enhancers	HMEC	breast
18	chr4:74477400-74485000	Weak transcription	A549	lung
19	chr4:74477800-74479400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:74478200-74479600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:74478400-74479600	Enhancers	Colonic Mucosa	Colon
22	chr4:74478400-74480200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:74478600-74479200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr4:74478600-74479400	Enhancers	Placenta	Placenta
25	chr4:74478600-74480400	Genic enhancers	Thymus	Thymus
26	chr4:74478600-74485800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:74478800-74479800	Enhancers	NHEK	skin
28	chr4:74478800-74480200	Enhancers	Pancreas	Pancrea

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