The 2.0 version of rSNPBase

Variant report

Variant rs17299020
Chromosome Location chr1:172793119-172793120
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172787400-172793800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
2 chr1:172787600-172793800 Enhancers NHDF-Ad bronchial
3 chr1:172788400-172793600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:172788400-172795400 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:172789000-172795400 Weak transcription Duodenum Mucosa Duodenum
7 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:172789400-172793800 Enhancers HSMM muscle
12 chr1:172789400-172795400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:172789600-172793800 Enhancers NHLF lung
14 chr1:172790000-172795200 Weak transcription Primary B cells from peripheral blood blood
15 chr1:172790200-172793800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:172790200-172794200 Enhancers Primary hematopoietic stem cells short term culture blood
17 chr1:172790200-172794400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr1:172790400-172794000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr1:172790600-172795200 Weak transcription Primary B cells from cord blood blood
20 chr1:172790800-172795400 Weak transcription A549 lung
21 chr1:172791000-172795200 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr1:172791200-172795200 Weak transcription Primary monocytes fromperipheralblood blood
23 chr1:172791200-172795400 Weak transcription Fetal Lung lung
24 chr1:172791200-172806200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:172791400-172795400 Weak transcription Brain Hippocampus Middle brain
26 chr1:172791400-172795400 Weak transcription Placenta Amnion Placenta Amnion
27 chr1:172791800-172794000 Enhancers Primary neutrophils fromperipheralblood blood
28 chr1:172791800-172795200 Weak transcription Primary hematopoietic stem cells blood
29 chr1:172792000-172795000 Weak transcription Dnd41 blood
30 chr1:172792000-172795600 Weak transcription K562 blood
31 chr1:172792400-172793200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:172792400-172793200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:172792400-172793600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:172792400-172793800 Enhancers Osteobl bone
35 chr1:172792400-172794000 Enhancers Muscle Satellite Cultured Cells --
36 chr1:172792400-172794200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:172792400-172794200 Enhancers HSMMtube muscle
38 chr1:172792600-172793600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:172792600-172793800 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr1:172792800-172793800 Enhancers Adipose Nuclei Adipose

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015