Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:172725233..172726811-chr1:172732167..172734221,2	K562	blood:
2	chr1:172726299..172728940-chr1:172732023..172734758,2	MCF-7	breast:
3	chr1:172704566..172706216-chr1:172724712..172727037,2	K562	blood:
4	chr1:172710406..172712231-chr1:172726192..172728085,2	MCF-7	breast:
5	chr1:172724823..172727270-chr1:172740302..172742079,2	MCF-7	breast:
6	chr1:172723025..172725126-chr1:172725246..172727256,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489277	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10912479	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12058539	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12119745	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12120752	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12131725	0.84[ASN][1000 genomes]
rs12139044	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12142778	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12143438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12145987	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17299020	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17299078	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4916193	0.84[ASN][1000 genomes]
rs4916194	0.80[EUR][1000 genomes]
rs4916281	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs704843	0.92[ASN][1000 genomes]
rs704844	0.92[ASN][1000 genomes]
rs724901	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs859670	0.84[ASN][1000 genomes]
rs859672	0.92[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172716400-172729400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: