Variant report

Variant	rs859672
Chromosome Location	chr1:172674554-172674555
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172665916..172668309-chr1:172673955..172675767,2	K562	blood:

rs_ID	r²[population]
rs12119745	1.00[ASN][1000 genomes]
rs12120752	1.00[ASN][1000 genomes]
rs12125542	0.92[ASN][1000 genomes]
rs12131725	0.92[ASN][1000 genomes]
rs12139044	1.00[ASN][1000 genomes]
rs12143438	0.92[ASN][1000 genomes]
rs12144816	1.00[ASN][1000 genomes]
rs12145987	0.92[ASN][1000 genomes]
rs4916193	0.92[ASN][1000 genomes]
rs704843	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704844	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859669	0.84[ASN][1000 genomes]
rs859670	0.92[ASN][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172665200-172675000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:172666200-172675600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:172667400-172674600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:172668600-172675000	Enhancers	Primary T cells from cord blood	blood
5	chr1:172669200-172674600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:172669400-172679000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:172670600-172675200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:172672800-172674600	Enhancers	Dnd41	blood
9	chr1:172673200-172674600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:172673200-172674600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:172673400-172675000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:172673400-172679000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172673600-172674600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:172674000-172677800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:172674000-172681000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:172674200-172675200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:172674200-172675200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:172674200-172676200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:172674400-172677200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:172674400-172683000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:172674400-172683000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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