Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172717095..172718672-chr1:172718732..172721628,2	K562	blood:

Variant related genes	Relation type
ENSG00000229785	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10489277	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10912479	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12058539	0.89[AMR][1000 genomes]
rs12119745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120752	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12131725	0.92[ASN][1000 genomes]
rs12139044	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142778	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12143438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12145987	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17299020	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17299078	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4916193	0.92[ASN][1000 genomes]
rs4916194	0.84[EUR][1000 genomes]
rs4916281	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs704843	1.00[ASN][1000 genomes]
rs704844	1.00[ASN][1000 genomes]
rs724901	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs859669	0.84[ASN][1000 genomes]
rs859670	0.92[ASN][1000 genomes]
rs859672	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946506	chr1:172718056-172719305	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172716400-172729400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:172716600-172722200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:172716800-172723400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:172717000-172719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:172717000-172722800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:172717000-172723200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:172718200-172719000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:172718600-172719200	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search: