Variant report

Variant	rs17299871
Chromosome Location	chr13:93600239-93600240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12429179	1.00[CEU][hapmap]
rs12431282	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335323	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1335324	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3844385	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59979722	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556250	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9561238	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9561240	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900908	chr13:93575720-93618766	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900909	chr13:93575720-93643214	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900910	chr13:93582208-93680065	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93599800-93601000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:93600000-93600400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:93600000-93600600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:93600000-93600600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:93600000-93600600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:93600000-93600600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:93600200-93600600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:93600200-93600600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:93600200-93600600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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