Variant report

Variant	rs173144
Chromosome Location	chr3:146344694-146344695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs342905	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs342906	0.94[ASN][1000 genomes]
rs342907	0.94[ASN][1000 genomes]
rs342908	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs342910	0.89[ASN][1000 genomes]
rs342911	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs342912	0.91[ASN][1000 genomes]
rs342934	0.82[ASN][1000 genomes]
rs342935	0.81[ASN][1000 genomes]
rs342936	0.85[ASN][1000 genomes]
rs342937	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs342938	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs342939	0.85[ASN][1000 genomes]
rs342940	1.00[CHB][hapmap];0.84[CHD][hapmap];0.83[ASN][1000 genomes]
rs342941	1.00[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs343278	0.86[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146342600-146346800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:146343200-146346400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:146343400-146344800	Enhancers	HUVEC	blood vessel
4	chr3:146343400-146345000	Weak transcription	Ovary	ovary
5	chr3:146344000-146345400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:146344200-146344800	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:146344400-146344800	Enhancers	Fetal Brain Male	brain
8	chr3:146344400-146344800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr3:146344400-146346000	Enhancers	HepG2	liver
10	chr3:146344600-146345400	Enhancers	Fetal Stomach	stomach
11	chr3:146344600-146351000	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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