Variant report

Variant	rs343278
Chromosome Location	chr3:146341576-146341577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs173144	0.86[ASN][1000 genomes]
rs342905	0.80[ASN][1000 genomes]
rs342906	0.91[ASN][1000 genomes]
rs342907	0.92[ASN][1000 genomes]
rs342908	0.91[ASN][1000 genomes]
rs342909	0.89[AMR][1000 genomes]
rs342910	0.97[ASN][1000 genomes]
rs342911	0.91[ASN][1000 genomes]
rs342912	0.95[ASN][1000 genomes]
rs342934	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs342935	0.83[ASN][1000 genomes]
rs342936	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs342937	0.80[ASN][1000 genomes]
rs342938	0.80[ASN][1000 genomes]
rs342939	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs342940	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs342941	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs343278	PLSCR1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146339800-146344000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:146340200-146342600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:146340400-146343000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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