Variant report
| Variant | rs17318489 |
|---|---|
| Chromosome Location | chr4:173778568-173778569 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1026505 | 0.90[ASN][1000 genomes] |
| rs12512152 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13112941 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1459155 | 0.90[ASN][1000 genomes] |
| rs1459156 | 0.97[ASN][1000 genomes] |
| rs17058964 | 0.95[ASN][1000 genomes] |
| rs17318218 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1824347 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1903126 | 0.90[ASN][1000 genomes] |
| rs1947639 | 0.95[ASN][1000 genomes] |
| rs28718496 | 0.97[ASN][1000 genomes] |
| rs34547986 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35447014 | 0.95[ASN][1000 genomes] |
| rs6553659 | 0.95[ASN][1000 genomes] |
| rs6833917 | 0.98[ASN][1000 genomes] |
| rs6844018 | 0.95[ASN][1000 genomes] |
| rs7660673 | 0.90[ASN][1000 genomes] |
| rs7673435 | 0.90[ASN][1000 genomes] |
| rs898197 | 0.97[ASN][1000 genomes] |
| rs9637709 | 0.90[ASN][1000 genomes] |
| rs9637710 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9968432 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948856 | chr4:173388217-173967546 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv949126 | chr4:173466221-174051451 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | esv3327952 | chr4:173591786-173805861 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv881394 | chr4:173757115-173847405 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:173777000-173778600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr4:173777800-173779200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
