Variant report

Variant	rs898197
Chromosome Location	chr4:173772793-173772794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173772490..173774977-chr4:173778723..173780805,2	MCF-7	breast:
2	chr4:173772777..173774432-chr4:173778610..173781377,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10004584	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1026505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1116651	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1116652	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11935653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12512152	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13112941	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1350586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1459154	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1459155	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1459156	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17058964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17058973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17058981	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17318218	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17318489	0.97[ASN][1000 genomes]
rs1824347	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1903126	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1947639	0.98[ASN][1000 genomes]
rs28718496	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34547986	0.97[ASN][1000 genomes]
rs35447014	0.98[ASN][1000 genomes]
rs6553659	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6833917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6844018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7673435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7691157	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9637709	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9637710	0.93[ASN][1000 genomes]
rs9968432	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv881394	chr4:173757115-173847405	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv967705	chr4:173769496-173776749	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173771200-173773400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:173771600-173773000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:173771600-173773200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:173771600-173773200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:173771600-173773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:173771600-173773400	Enhancers	HMEC	breast
7	chr4:173771800-173772800	Enhancers	HSMM	muscle
8	chr4:173771800-173773000	Enhancers	NH-A	brain
9	chr4:173771800-173773000	Enhancers	NHEK	skin
10	chr4:173771800-173773200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:173771800-173773200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:173771800-173773200	Enhancers	NHDF-Ad	bronchial
13	chr4:173772000-173772800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:173772000-173773000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:173772600-173773200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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