Variant report

Variant	rs7673435
Chromosome Location	chr4:173792231-173792232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173786122..173788666-chr4:173791027..173793744,2	K562	blood:
2	chr4:173791475..173792294-chr4:174130337..174130842,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGB2-12	chr4:173792116-173792287	ucscGeneNc_uc003isw_2

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10004584	0.82[CHB][hapmap]
rs1026505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1116651	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1116652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11935653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12512152	0.83[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13112941	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1350586	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1459155	0.84[ASN][1000 genomes]
rs1459156	0.93[ASN][1000 genomes]
rs17058964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17058973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17058981	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17318218	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17318489	0.90[ASN][1000 genomes]
rs1824347	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1903126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1947639	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28718496	0.93[ASN][1000 genomes]
rs34547986	0.90[ASN][1000 genomes]
rs35447014	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6553659	0.95[ASN][1000 genomes]
rs6833917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6844018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7660673	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691157	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs898197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9637709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9637710	0.97[ASN][1000 genomes]
rs9968432	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv881394	chr4:173757115-173847405	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173790200-173793600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:173790200-173797600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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