Variant report

Variant	rs17324954
Chromosome Location	chr4:106511488-106511489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs199332	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72669961	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72669966	0.86[EUR][1000 genomes]
rs72669971	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106506200-106512800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:106508400-106513800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:106509200-106514400	Weak transcription	Pancreas	Pancrea
5	chr4:106509400-106515400	Weak transcription	Fetal Kidney	kidney
6	chr4:106509600-106514800	Weak transcription	Liver	Liver
7	chr4:106509600-106515400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:106509800-106515000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:106509800-106515200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:106510000-106513400	Weak transcription	GM12878-XiMat	blood
11	chr4:106510800-106514000	Weak transcription	Fetal Intestine Small	intestine
12	chr4:106511200-106512800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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