Variant report

Variant	rs72669966
Chromosome Location	chr4:106514711-106514712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11725523	0.84[EUR][1000 genomes]
rs11735213	0.91[EUR][1000 genomes]
rs11946424	0.81[AFR][1000 genomes]
rs11946450	0.81[AFR][1000 genomes]
rs1374531	0.91[EUR][1000 genomes]
rs17035917	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17324954	0.86[EUR][1000 genomes]
rs199332	0.83[EUR][1000 genomes]
rs72669960	0.84[EUR][1000 genomes]
rs72669961	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72669971	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669974	0.82[EUR][1000 genomes]
rs72669978	0.82[EUR][1000 genomes]
rs72669980	0.82[EUR][1000 genomes]
rs72669981	0.82[EUR][1000 genomes]
rs72669982	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106509400-106515400	Weak transcription	Fetal Kidney	kidney
3	chr4:106509600-106514800	Weak transcription	Liver	Liver
4	chr4:106509600-106515400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:106509800-106515000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:106509800-106515200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:106513400-106519400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:106513800-106514800	Weak transcription	GM12878-XiMat	blood
9	chr4:106513800-106518800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:106514000-106515800	Enhancers	Fetal Intestine Large	intestine
11	chr4:106514000-106515800	Enhancers	Fetal Intestine Small	intestine
12	chr4:106514400-106514800	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links