Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106524640..106526715-chr4:106568646..106571321,2	MCF-7	breast:
2	chr4:106524514..106526523-chr4:106526666..106529139,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11725523	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11735213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1374531	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17035917	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17035960	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17035971	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17036027	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17036052	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17036066	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17036076	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17036090	0.80[AMR][1000 genomes]
rs72669961	0.89[EUR][1000 genomes]
rs72669966	0.86[EUR][1000 genomes]
rs72669971	0.91[EUR][1000 genomes]
rs72669972	0.83[EUR][1000 genomes]
rs72669974	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669978	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669980	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669981	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669986	0.83[EUR][1000 genomes]
rs72669992	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72669993	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72669995	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72669997	0.84[AMR][1000 genomes]
rs72669998	0.80[AMR][1000 genomes]
rs72670002	0.84[AMR][1000 genomes]
rs73837067	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106520200-106526400	Weak transcription	NHEK	skin
5	chr4:106521200-106526800	Weak transcription	Stomach Mucosa	stomach
6	chr4:106521400-106526800	Weak transcription	Fetal Intestine Small	intestine
7	chr4:106521600-106526600	Weak transcription	Fetal Heart	heart
8	chr4:106521800-106526400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
10	chr4:106523400-106526400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:106523600-106525400	Strong transcription	Fetal Intestine Large	intestine
12	chr4:106523800-106528800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:106524000-106526400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:106524600-106540400	Weak transcription	Pancreas	Pancrea

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