Variant report

Variant	rs17035917
Chromosome Location	chr4:106520742-106520743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10019217	0.88[CEU][hapmap]
rs10516525	1.00[CEU][hapmap]
rs10516526	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11724839	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11725523	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11726569	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11727189	1.00[CEU][hapmap]
rs11727348	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11727735	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11727745	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11728044	1.00[CEU][hapmap]
rs11732298	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11733225	1.00[CEU][hapmap]
rs11733287	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11735213	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735851	1.00[CEU][hapmap]
rs11736859	1.00[CEU][hapmap]
rs11937075	1.00[GIH][hapmap]
rs11944959	1.00[GIH][hapmap]
rs12374256	1.00[CEU][hapmap]
rs1374531	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17035960	0.88[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17035971	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17036027	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036052	0.82[AMR][1000 genomes]
rs17036066	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17036076	0.82[AMR][1000 genomes]
rs17036097	0.88[CEU][hapmap]
rs17036123	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036129	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036139	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036142	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036156	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17036225	1.00[CEU][hapmap]
rs17036230	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs199332	0.90[TSI][hapmap]
rs72669961	0.84[EUR][1000 genomes]
rs72669966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669971	0.86[EUR][1000 genomes]
rs72669974	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669978	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669980	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669981	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669982	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72669992	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17035917	FABP4	trans	brain	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106515600-106521000	Weak transcription	Fetal Heart	heart
3	chr4:106516000-106521200	Weak transcription	Fetal Kidney	kidney
4	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:106518000-106521600	Weak transcription	Right Atrium	heart
7	chr4:106518200-106524400	Weak transcription	Lung	lung
8	chr4:106518200-106524400	Weak transcription	Pancreas	Pancrea
9	chr4:106518800-106520800	Enhancers	Fetal Intestine Large	intestine
10	chr4:106518800-106521400	Enhancers	Fetal Intestine Small	intestine
11	chr4:106518800-106521800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:106519200-106521200	Enhancers	Stomach Mucosa	stomach
13	chr4:106520200-106521200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:106520200-106526400	Weak transcription	NHEK	skin
15	chr4:106520400-106523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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