Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106515537..106517384-chr4:106628417..106630583,2	MCF-7	breast:
2	chr4:106441991..106443723-chr4:106514894..106517576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction
ENSG00000138780	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11725523	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11735213	0.86[EUR][1000 genomes]
rs1374531	0.86[EUR][1000 genomes]
rs17035917	0.86[EUR][1000 genomes]
rs17035960	0.87[EUR][1000 genomes]
rs17035971	0.87[EUR][1000 genomes]
rs17036027	0.82[EUR][1000 genomes]
rs17036066	0.83[EUR][1000 genomes]
rs17036076	0.85[EUR][1000 genomes]
rs17324954	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72669960	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72669961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72669966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72669972	0.81[EUR][1000 genomes]
rs72669974	0.91[EUR][1000 genomes]
rs72669978	0.91[EUR][1000 genomes]
rs72669980	0.91[EUR][1000 genomes]
rs72669981	0.91[EUR][1000 genomes]
rs72669982	0.91[EUR][1000 genomes]
rs72669992	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106513400-106519400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:106513800-106518800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:106514800-106517200	Weak transcription	Pancreas	Pancrea
5	chr4:106515600-106519200	Weak transcription	Stomach Mucosa	stomach
6	chr4:106515600-106521000	Weak transcription	Fetal Heart	heart
7	chr4:106515800-106517400	Weak transcription	Fetal Intestine Small	intestine
8	chr4:106516000-106519800	Weak transcription	A549	lung
9	chr4:106516000-106521200	Weak transcription	Fetal Kidney	kidney
10	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:106516200-106520000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:106516800-106517400	Weak transcription	Fetal Intestine Large	intestine

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